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Jun Wen
Research Botanist and Curator of Botany (Vitaceae and Asian Plants)Department / Division
Education
- Ph.D., The Ohio State University
- B.S., Central China Agricultural University
Research Interests
Monographic, phylogenetic, biogeographic and ethnobotanical studies of the ginseng family (Araliaceae) and the grape family (Vitaceae); Systematics and biogeography of intercontinental disjunct plants in the Northern Hemisphere; Biogeography of Asia; Systematics and conservation of medicinal plants of Asia; Biodiversity inventory and conservation studies in Asia.
Publications
Journal Article
- Ang, Lee-Ping, Brambach, Fabian, Tomasello, Salvatore, Wen, Jun, and Appelhans, Marc S. 2024. "Hybrid capture resolves the phylogeny of Tetradium (Rutaceae) and supports the inclusion of a species from Sulawesi." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13127.
- Chen, Xingru, Wu, Shaode, Nie, Zelong, Wen, Jun, and Meng, Ying. 2024. "Comparative analyses of complete plastid genomes of representative species of subfamily Convallarioideae (Asparagaceae)." Phytotaxa, 638, (1) 20–32. https://doi.org/10.11646/phytotaxa.638.1.2.
- Gu, Shi‐Ran, Zeng, Qiu‐Biao, Clark, Ruth, Jiang, Kai‐Wen, Pérez‐Escobar, Oscar Alejandro, Li, Shi‐Jin, Tan, Wei‐Ning, Xie, Zhi, Mattapha, Sawai, Shi, Miao‐Miao, Wang, Xiang‐Ping, Zhao, Zhong‐Tao, Antonelli, Alexandre, Tu, Tie‐Yao, Wen, Jun, and Zhang, Dian‐Xiang. 2024. "Phylogeny and re‐circumscription of Cheniella (Leguminosae: Cercidoideae) based on plastome data and morphology, with description of three new species." Taxon, 73, (2) 475–502. https://doi.org/10.1002/tax.13177.
- He, Guan-Hao, Zhang, Lei, Meng, Ying, Wen, Jun, and Nie, Ze-Long. 2024. "The complete chloroplast genome of Nekemias hypoglauca (Hance) J. Wen & Z. L. Nie 2014 (Family: Vitaceae) and its phylogenetic analysis." Mitochondrial DNA Part B, 9, (2) 272–276. https://doi.org/10.1080/23802359.2024.2316071.
- Huang, Lan, Xu, Yujie, Valcárcel, Virginia, Lutz, Sue, Wen, Jun, and Ren, Zhumei. 2024. "Three complete chloroplast genomes from two north American Rhus species and phylogenomics of Anacardiaceae." BMC Genomic Data, 25, (1) 30. https://doi.org/10.1186/s12863-024-01200-6.
- Kwak, Myounghai, Nakamura, Koh, Xiang, Qiaoping, Wen, Jun, Lee, Eun Sil, Hong, Jaram, Kovtonyuk, Nataliya, Kryukova, Maria, Korchagina, Olga, Koo, Kyung Ah, Iwaizumi, Masakazu G., Lee, Byoung Yoon, Kokubugata, Goro, Zhang, Xianchun, and Lebedev, Dmitry. 2024. "Circular genetic structure of the Abies nephrolepis species complex shaped by the circular landform of Northeast Asia." Journal of Biogeography, 1–16. https://doi.org/10.1111/jbi.14841.
- Lan, Zhi-Qiong, Zheng, Wen, Talavera, Alicia, Nie, Ze-Long, Liu, Jing, Johnson, Gabriel, Yin, Xian-Mei, Zhao, Wen-Qi, Zhao, Zong-Yi, Handy, Sara M., and Wen, Jun. 2024. "Comparative and phylogenetic analyses of plastid genomes of the medicinally important genus Alisma (Alismataceae)." Frontiers in Plant Science, 15. https://doi.org/10.3389/fpls.2024.1415253.
- Lao, Xiao-Lin, Meng, Ying, Wu, Jue, Wen, Jun, and Nie, Ze-Long. 2024. "Plastid genomes provide insights into the phylogeny and chloroplast evolution of the paper daisy tribe Gnaphalieae (Asteraceae)." Gene, 901. https://doi.org/10.1016/j.gene.2024.148177.
- Li, Qin-Qin, Zhang, Zhi-Ping, Aogan, and Wen, Jun. 2024. "Comparative chloroplast genomes of Argentina species: genome evolution and phylogenomic implications." Frontiers in Plant Science, 15. https://doi.org/10.3389/fpls.2024.1349358.
- Liang, Yukang, Dikow, Rebecca B., Su, Xu, Wen, Jun, and Ren, Zhumei. 2024. "Comparative genomics of the primary endosymbiont Buchnera aphidicola in aphid hosts and their coevolutionary relationships." BMC Biology, 22, (1). https://doi.org/10.1186/s12915-024-01934-w.
- Moore, Gerry, Smith, Gideon F., Figueiredo, Estrela, Landrum, Leslie R., Gereau, Roy E., Prado, Jefferson, Demissew, Sebsebe, Applequist, Wendy, Quintanar, Alejandro, Fortunato, Renée, Freire‐Fierro, Alina, Wen, Jun, and Deng, Yun‐Fei. 2024. "In defense of the primacy of the Nomenclature Section in decision‐making in botanical nomenclature: A reply to the Rapporteurs’ comment on Proposal 193 to amend the Shenzhen Code." Taxon, https://doi.org/10.1002/tax.13182.
- Parins‐Fukuchi, Charles Tomo, Stull, Gregory W., Wen, Jun, and Beaulieu, Jeremy M. 2024. "Transitions Into Freezing Environments Linked With Shifts in Phylogenetic Integration Between Vitaceae Leaf Traits." Ecology and Evolution, 14, (11). https://doi.org/10.1002/ece3.70553.
- Qin, Yu-Qian, Zhang, Meng-Hua, Yang, Chu-Yun, Nie, Ze-Long, Wen, Jun, and Meng, Ying. 2024. "Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region." Molecular phylogenetics and evolution, 190. https://doi.org/10.1016/j.ympev.2023.107962.
- Ren, Chen, Wang, Long, Nie, Ze-Long, Tang, Ming, Johnson, Gabriel, Tan, Hui-Tong, Xia, Nian-He, Wen, Jun, and Yang, Qin-Er. 2024. "Complex but Clear Allopolyploid Pattern of Subtribe Tussilagininae (Asteraceae: Senecioneae) Revealed by Robust Phylogenomic Evidence, with Development of a Novel Homeolog-Sorting Pipeline." Systematic Biology, https://doi.org/10.1093/sysbio/syae046.
- Tu, Tieyao, Cai, Jie, Razafimandimbison, Sylvain G., Hu, Xiaoying, Xia, Qian, Yang, Hong, Gu, Shiran, Huang, Tianyi, Zhao, Zhongtao, Shi, Miaomiao, Wang, Xiangping, Li, Shijin, Xie, Peiwu, Wen, Jun, and Zhang, Dianxiang. 2024. "Biphyly of the genus Wendlandia and establishment of a new tribe Clavistigmeae and a new genus Clavistigma of Rubiaceae from Asia." Biological Diversity, https://doi.org/10.1002/bod2.12013.
- You, Yichen, Yu, Jinren, Nie, Zelong, Peng, Danxiao, Barrett, Russell L., Rabarijaona, Romer Narindra, Lai, Yangjun, Zhao, Yujie, Dang, Viet-Cuong, Chen, Youhua, Chen, Zhiduan, Wen, Jun, and Lu, Limin. 2024. "Transition of survival strategies under global climate shifts in the grape family." Nature Plants, 10, (7) 1100–1111. https://doi.org/10.1038/s41477-024-01726-8.
- Zhang, Lei, Meng, Ying, Wang, Da, He, Guan-Hao, Zhang, Jun-Ming, Wen, Jun, and Nie, Ze-Long. 2024. "Plastid genome data provide new insights into the dynamic evolution of the tribe Ampelopsideae (Vitaceae)." BMC Genomics, 25, (1) 247. https://doi.org/10.1186/s12864-024-10149-w.
- Zhang, Meng‐Hua, Nie, Ze‐Long, Fairbanks, Regina A., Liu, Jing, Literman, Robert, Johnson, Gabriel, Handy, Sara, and Wen, Jun. 2024. "Phylogenomic insights into species relationships, reticulate evolution, and biogeographic diversification of the ginseng genus Panax (Araliaceae), with an emphasis on the diversification in the Himalayan‐Hengduan Mountains." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13138.
- Zheng, Wen, Liu, Jing, Zhao, Wenqi, Zhao, Zongyi, Lan, Zhiqiong, and Wen, Jun. 2024. "The complete chloroplast genomes of three Alismataceae species, including the medicinally important Alisma orientale." Mitochondrial DNA Part B, 9, (3) 385–389. https://doi.org/10.1080/23802359.2024.2320419.
- Hong-Xin, Wang, Morales-Briones, Diego, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2023. "Biogeographic analysis based on phylogenomic data supports multiple ancient dispersals that facilitated the eastern Asia – North America - Mexico disjunction in subfamily Linnaeoideae (Caprifoliaceae)." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13036.
- Li, Qin-Qin, Khasbagan, Zhang, Zhi-Ping, Wen, Jun, and Yu, Yan. 2023. "Plastid Phylogenomics of the tribe Potentilleae (Rosaceae)." Molecular phylogenetics and evolution, https://doi.org/10.1016/j.ympev.2023.107961.
- Liu, Jing, Nie, Ze-Long, Ren, Chen, Su, Chun, and Wen, Jun. 2023. "Phylogenomics of Aralia sect. Aralia (Araliaceae): Signals of hybridization and insights into its species delimitations and intercontinental biogeography." Molecular phylogenetics and evolution, 181. https://doi.org/10.1016/j.ympev.2023.107727.
- Nie, Ze‐Long, Hodel, Richard, Ma, Zhi‐Yao, Johnson, Gabriel, Ren, Chen, Meng, Ying, Ickert‐Bond, Stefanie M., Liu, Xiu‐Qun, Zimmer, Elizabeth, and Wen, Jun. 2023. "Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone." Journal of Integrative Plant Biology, 65, (5) 1183–1203. https://doi.org/10.1111/jipb.13466.
- Rabarijaona, Romer Narindra, Ranaivoson, Rindra Manasoa, Yu, Jin‐Ren, You, Yi‐Chen, Liu, Bing, Ye, Jian‐Fei, Barrett, Russell L, Rakotoarinivo, Mijoro, Lin, Xiao‐Lei, Wen, Jun, Chen, Zhi‐Duan, and Lu, Li‐Min. 2023. "Species delimitation and biogeography of Cyphostemma (Vitaceae), emphasizing diversification and ecological adaptation in Madagascar." Taxon, https://doi.org/10.1002/tax.12980.
- Su, Na, Hodel, Richard G. J., Wang, Xi, Wang, Jun-ru, Xie, Si-Yu, Gui, Chao-Xia, Zhang, Ling, Chang, Zhao-Yang, Zhao, Liang, Potter, Daniel, and Wen, Jun. 2023. "Molecular phylogeny and inflorescence evolution of Prunus (Rosaceae) based on RAD-seq and genome skimming analyses." Plant Diversity, 45, (4) 397–408. https://doi.org/10.1016/j.pld.2023.03.013.
- Sun, Qing-Hui, Morales-Briones, Diego F., Wang, Hong-Xin, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2023. "Target sequence capture data shed light on the deeper evolutionary relationships of subgenus Chamaecerasus in Lonicera (Caprifoliaceae)." Molecular phylogenetics and evolution, 184. https://doi.org/10.1016/j.ympev.2023.107808.
- Wagner, Warren L. and Wen, Jun. 2023. "Collections-Based Science in the Twenty-First Century: A Tribute to the Botanical Giant Vicki Funk." International Journal of Plant Sciences, 184, (5) 405–411. https://doi.org/10.1086/724308.
- Wang, Guo-Qing, Scherson, Rosa A., Vera, Diego, Bai, Yun-hao, Wen, Jun, Guo, Lin-Yuan, Hughes, Alice C., and Wang, Hua-Feng. 2023. "Spatial patterns and drivers of native plant diversity in Hainan, China." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13017.
- Li, Yi, Li, Zihao, Zhang, Furui, Li, Song, Gu, Yongbing, Tian, Weijun, Tian, Weirong, Wang, Jianbo, Wen, Jun, and Li, Jiaru. 2023. "Integrated evolutionary pattern analyses reveal multiple origins of steroidal saponins in plants." The Plant Journal, https://doi.org/10.1111/tpj.16411.
- Wen, Jun, Krupnick, Gary, and Esser, Hans-Joachim. 2023. "Panax siamensis J. Wen, a new species of the ginseng genus (Panax, Araliaceae) from northern Thailand." Phytokeys, (234) 51–59. https://doi.org/10.3897/phytokeys.234.106289.
- Wen, Jun, Stull, Gregory W., and Hodel, Richard G. J. 2023. "Collection-based integrative systematics in the new age of informatics and genomics." Pleione, 17, (2) 117–137. https://doi.org/10.26679/Pleione.17.2.2023.117-131.
- Wen, Jun, Xie, Lei, Zhang, Zhi‐Yun, Liang, Yan, and Ge, Song. 2023. "Collections‐based systematics in the new age of discovery: Celebrating the legacy and life of Professor Wen‐Tsai Wang." Journal of Systematics and Evolution, 61, (1) 1–10. https://doi.org/10.1111/jse.12945.
- Johnson, Gabriel, Canty, Steven W. J., Lichter‐Marck, Isaac H., Wagner, Warren, and Wen, Jun. 2023. "Ethanol preservation and pretreatments facilitate quality DNA extractions in recalcitrant plant species." Applications in Plant Sciences, https://doi.org/10.1002/aps3.11519.
- Talavera, Alicia, Nie, Ze-Long, Ma, Zhi-Yao, Johnson, Gabriel, Ickert-Bond, Stefanie, Zimmer, Elizabeth A., and Wen, Jun. 2023. "Phylogenomic analyses using a new 1013-gene Vitaceae bait-set support major groups of North American Vitis." Molecular phylogenetics and evolution, 186. https://doi.org/10.1016/j.ympev.2023.107866.
- Yang, Xu‐Long, Sun, Qing‐Hui, Morales‐Briones, Diego F., Landis, Jacob B., Chen, Da‐Juan, Wang, Hong‐Xin, Wen, Jun, and Wang, Hua‐Feng. 2023. "New insights into infrageneric relationships of Lonicera (Caprifoliaceae) as revealed by nuclear ribosomal DNA cistron data and plastid phylogenomics." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13014.
- Yu, Jinren, Niu, Yanting, You, Yichen, Cox, Cymon J., Barrett, Russell L., Trias‐Blasi, Anna, Guo, Jing, Wen, Jun, Lu, Limin, and Chen, Zhiduan. 2023. "Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan–Hengduan Mountains." New Phytologist, 238, (2) 888–903. https://doi.org/10.1111/nph.18580.
- Yu, Jinren, Zhao, Hong, Niu, Yanting, You, Yichen, Barrett, Russell L., Ranaivoson, Rindra Manasoa, Rabarijaona, Romer Narindra, Parmar, Gaurav, Yuan, Langxing, Jin, Xiaofeng, Li, Pan, Li, Jianhua, Wen, Jun, Chen, Zhiduan, and Lu, Limin. 2023. "Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)." BMC Biology, 21, (1) 209. https://doi.org/10.1186/s12915-023-01718-8.
- Khan, Darya, Harris, Aj, Zaman, Qamar U., Wang, Hong-Xin, Wen, Jun, Landis, Jacob B., and Wang, Hua-Feng. 2022. "The evolutionary history and distribution of cactus germplasm resources, as well as potential domestication under a changing climate." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.13042.
- Liang, Yukang, von Dohlen, Carol D., Wen, Jun, Su, Chun, and Ren, Zhumei. 2022. "Comparative mitochondrial genomes of the Rhus gall aphid Kaburagia rhusicola subspecies with variable gall shapes." Gene, 824. https://doi.org/10.1016/j.gene.2022.146379.
- Liu, Bin-Bin, Ren, Chen, Kwak, Myounghai, Hodel, Richard G. J., Xu, Chao, He, Jian, Zhou, Wen-Bin, Huang, Chien-Hsun, Ma, Hong, Qian, Guan-Ze, Hong, De-Yuan, and Wen, Jun. 2022. "Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere." Journal of Integrative Plant Biology, 64, (5) 2020–1043. https://doi.org/10.1111/jipb.13246.
- Hodel, Richard G. J., Zimmer, Elizabeth A., Liu, Bin-Bin, and Wen, Jun. 2022. "Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade." Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.820997.
- Sun, Qing-Hui, Morales-Briones, Diego F., Wang, Hong-Xin, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2022. "Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread hybridization." Annals of Botany, 129, (2) 201–216. https://doi.org/10.1093/aob/mcab139.
- Duan, Lei, Han, Li-Na, Liu, Bin-Bin, Leostrin, Artem, Harris, Aj, Wang, Lin, Arslan, Emine, Ertuğrul, Kuddisi, Knyazev, Mikhail, Hantemirova, Elena, Wen, Jun, and Chen, Hong-Feng. 2022. "Species delimitation of the liquorice tribe (Leguminosae: Glycyrrhizeae) based on phylogenomic and machine learning analyses." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.12902.
- Smith, Gideon F., Figueiredo, Estrela, Moore, Gerry, Landrum, Leslie R., Gereau, Roy E., Prado, Jefferson, Demissew, Sebsebe, Applequist, Wendy, Quintanar, Alejandro, Fortunato, Renée, Freire‐Fierro, Alina, Wen, Jun, and Deng, Yun‐Fei. 2022. "(193) Proposal to democratize aspects of the governance of the International Code of Nomenclature for algae, fungi, and plants." Taxon, 71, (6) 1344–1345. https://doi.org/10.1002/tax.12855.
- Dong, Wenpan, Li, Enze, Liu, Yanlei, Xu, Chao, Wang, Yushuang, Liu, Kangjia, Cui, Xingyong, Sun, Jiahui, Suo, Zhili, Zhang, Zhixiang, Wen, Jun, and Zhou, Shiliang. 2022. "Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family." BMC Biology, 20, (1) 92. https://doi.org/10.1186/s12915-022-01297-0.
- Literman, Robert A., Ott, Brittany M., Wen, Jun, Grauke, L. J., Schwartz, Rachel S., and Handy, Sara M. 2022. "Reference-free discovery of nuclear SNPs permits accurate, sensitive identification of Carya (hickory) species and hybrids." Applications in Plant Sciences, https://doi.org/10.1002/aps3.11455.
- Xin, Haiping, Wang, Yi, Li, Qingyun, Wan, Tao, Hou, Yujun, Liu, Yuanshuang, Gichuki, Duncan Kiragu, Zhou, Huimin, Zhu, Zhenfei, Xu, Chen, Zhou, Yadong, Liu, Zhiming, Li, Rongjun, Liu, Bing, Lu, Limin, Jiang, Hongsheng, Zhang, Jisen, Wan, Junnan, Aryal, Rishi, Hu, Guangwan, Chen, Zhiduan, Gituru, Robert Wahiti, Liang, Zhenchang, Wen, Jun, and Wang, Qingfeng. 2022. "A genome for Cissus illustrates features underlying its evolutionary success in dry savannas." Horticulture Research, 9. https://doi.org/10.1093/hr/uhac208.
- Gallego-Narbon, Angelica, Wen, Jun, Liu, Jing, and Valcarcel, Virginia. 2022. "Hybridization and genome duplication for early evolutionary success in the Asian Palmate group of Araliaceae." Journal of Systematics and Evolution, 60, (6) 1303–1318. https://doi.org/10.1111/jse.12906.
- Coca‐de‐la‐Iglesia, Marina, Medina, Nagore G., Wen, Jun, and Valcárcel, Virginia. 2022. "Evaluation of tropical–temperate transitions: An example of climatic characterization in the Asian Palmate group of Araliaceae." American Journal of Botany, 109, (9) 1488–1507. https://doi.org/10.1002/ajb2.16059.
- Li, Yi, Tan, Chao, Li, Zihao, Guo, Jingzhe, Li, Song, Chen, Xin, Wang, Chen, Dai, Xiaokang, Yang, Huan, Song, Wei, Hou, Lixiu, Xu, Jiali, Tong, Ziyu, Xu, Anran, Yuan, Xincheng, Wang, Weipeng, Yang, Qingyong, Chen, Lingling, Sun, Zongyi, Wang, Kai, Pan, Bo, Chen, Jianghua, Bao, Yinghua, Liu, Faguang, Qi, Xiaoquan et al. 2022. "The genome of Dioscorea zingiberensis sheds light on the biosynthesis, origin and evolution of the medicinally important diosgenin saponins." Horticulture Research, 9. https://doi.org/10.1093/hr/uhac165.
- Xu, Yujie, Wen, Jun, Su, Xu, and Ren, Zhumei. 2022. "Variation among the Complete Chloroplast Genomes of the Sumac Species Rhus chinensis: Reannotation and Comparative Analysis." Genes, 13, (11). https://doi.org/10.3390/genes13111936.
- Ke, Xiu-Rong, Morales-Briones, Diego F., Wang, Hong-Xin, Sun, Qing-Hui, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2022. "Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation, and biogeography of the Sino-Japanese disjunctive Diabelia (Caprifoliaceae)." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.12815.
- He, Jian, Lyu, Rudan, Luo, Yike, Xiao, Jiamin, Xie, Lei, Wen, Jun, Li, Wenhe, Pei, Linying, and Cheng, Jin. 2022. "A phylotranscriptome study using silica gel-dried leaf tissues produces an updated robust phylogeny of Ranunculaceae." Molecular phylogenetics and evolution, 174. https://doi.org/10.1016/j.ympev.2022.107545.
- Nie, Ze‐Long, Wen, Jun, Ma, Zhi‐Yao, Tian, Jing‐Pu, Zhou, Yong‐Feng, Liu, Xiu‐Qun, and Zimmer, Elizabeth. 2022. "Phylogenetic relationships, hybridization events, and drivers of diversification of East Asian wild grapes as revealed by phylogenomic analyses." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.12918.
- Wiersema, John H., Wen, Jun, and Zijlstra, Gea. 2022. "(2900) Proposal to conserve the name Ampelopsis (Vitaceae) with a conserved type." Taxon, 71, (3) 700–701. https://doi.org/10.1002/tax.12753.
- Jamal, Abbas, Wen, Jun, Ma, Zhi-Yao, Ahmed, Ibrar, Abdulla, Chen, Long-Qing, Nie, Ze-Long, and Liu, Xiu-Qun. 2021. "Comparative Chloroplast Genome Analyses of the Winter-Blooming Eastern Asian Endemic Genus Chimonanthus (Calycanthaceae) With Implications For Its Phylogeny and Diversification." Frontiers in Genetics, 12. https://doi.org/10.3389/fgene.2021.709996.
- Ma, Zhi-Yao, Nie, Ze-Long, Ren, Chen, Liu, Xiu-Qun, Zimmer, Elizabeth A., and Wen, Jun. 2021. "Phylogenomic relationships and character evolution of the grape family (Vitaceae)." Molecular phylogenetics and evolution, 154 Article 106948. https://doi.org/10.1016/j.ympev.2020.106948.
- Ren, Chen, Wang, Long, Nie, Ze-Long, Johnson, Gabriel, Yang, Qin-Er, and Wen, Jun. 2021. "Development and phylogenetic utilities of a new set of single-/low-copy nuclear genes in Senecioneae (Asteraceae), with new insights into the tribal position and the relationships within subtribe Tussilagininae." Molecular phylogenetics and evolution, 162. https://doi.org/10.1016/j.ympev.2021.107202.
- Su, Na, Liu, Bin-Bin, Wang, Jun-ru, Tong, Ru-chang, Ren, Chen, Chang, Zhao-Yang, Zhao, Liang, Potter, Daniel, and Wen, Jun. 2021. "On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology." Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.743643.
- Reichelt, Niklas, Wen, Jun, Paetzold, Claudia, and Appelhans, Marc S. 2021. "Target enrichment improves phylogenetic resolution in the genus Zanthoxylum (Rutaceae) and indicates both incomplete lineage sorting and hybridization events." Annals of Botany, 128, (4) 497–510. https://doi.org/10.1093/aob/mcab092.
- Duan, Lei, Han, Li-Na, Sirichamorn, Yotsawate, Wen, Jun, Compton, James A., Deng, Shuang-Wen, Arslan, Emine, Ertugrul, Kuddisi, Schrire, Brian, and Chen, Hong-Feng. 2021. "Proposal to recognise the tribes Adinobotryeae and Glycyrrhizeae (Leguminosae subfamily Papilionoideae) based on chloroplast phylogenomic evidence." Phytokeys, (181) 65–77. https://doi.org/10.3897/phytokeys.181.71259.
- Parmar, Gaurav, Viet-Cuong Dang, Rabarijaona, Romer Narindra, Chen, Zhi-Duan, Jackes, Betsy R., Barrett, Russell L., Zhang, Zhu-Zhi, Niu, Yan-Ting, Trias-Blasi, Anna, Wen, Jun, and Lu, Li-Min. 2021. "Phylogeny, character evolution and taxonomic revision of Causonis, a segregate genus from Cayratia (Vitaceae)." Taxon, https://doi.org/10.1002/tax.12562.
- Peng, Dan-Xiao, Dang, Viet-Cuong, Habib, Sadaf, Barrett, Russell L., Trias-Blasi, Anna, Wen, Jun, Chen, Zhi-Duan, and Lu, Li-Min. 2021. "Historical biogeography of Tetrastigma (Vitaceae): Insights into floristic exchange patterns between Asia and Australia." Cladistics, https://doi.org/10.1111/cla.12462.
- Dong, Wen-Pan, Sun, Jia-Hui, Liu, Yan-Lei, Xu, Chao, Wang, Yi-Heng, Suo, Zhi-Li, Zhou, Shi-Liang, Zhang, Zhi-Xiang, and Wen, Jun. 2021. "Phylogenomic relationships and species identification of the olive genus Olea (Oleaceae)." Journal of Systematics and Evolution, https://doi.org/10.1111/jse.12802.
- Su, Chun, Duan, Lei, Liu, Peiliang, Liu, Jing, Chang, Zhaoyang, and Wen, Jun. 2021. "Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia." Molecular phylogenetics and evolution, 156. https://doi.org/10.1016/j.ympev.2020.107025.
- Lei, Feng-Wei, Tong, Ling, Zhu, Yi-Xuan, Mu, Xian-Yun, Tu, Tie-Yao, and Wen, Jun. 2021. "Plastid phylogenomics and biogeography of the medicinal plant lineage Hyoscyameae (Solanaceae)." Plant Diversity, 43, (3) 192–197. https://doi.org/10.1016/j.pld.2021.01.005.
- Zhao, Ting, Zuo, Zheng-Yu, Ebihara, Atsushi, Nakato, Narumi, Soejima, Akiko, Li, De-Zhu, Wen, Jun, and Lu, Jin-Mei. 2021. "Adiantum japonicum, a new species of the Adiantum pedatum complex (Pteridaceae) from Japan." Phytotaxa, 525, (1) 1–14. https://doi.org/10.11646/phytotaxa.525.1.1.
- Du, Xin-Yu, Wen, Jun, Zhang, Li-Bing, Kuo, Li-Yaung, Mynssen, Claudine M., Schneider, Harald, Lu, Jin-Mei, and Li, De-Zhu. 2021. "Simultaneous diversification of Polypodiales and angiosperms in the Mesozoic." Cladistics, https://doi.org/10.1111/cla.12457.
- Li, Qin-Qin and Wen, Jun. 2021. "The complete chloroplast genome of Geum macrophyllum (Rosaceae: Colurieae)." Mitochondrial Dna Part B-Resources, 6, (2) 297–298. https://doi.org/10.1080/23802359.2020.1861562.
- Li, Qin-Qin, Yu, Yan, Zhang, Zhi-Ping, and Wen, Jun. 2021. "Comparison among the chloroplast genomes of five species of Chamaerhodos (Rosaceae: Potentilleae): phylogenetic implications." Nordic Journal of Botany, 39, (6). https://doi.org/10.1111/njb.03121.
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- Meng, Ying, Nie, Ze-Long, Deng, Tao, Wen, Jun, and Yang, Yong-Ping. 2014. "Phylogenetics and evolution of phyllotaxy in the Solomon's seal genus Polygonatum (Asparagaceae: Polygonateae)." Botanical Journal of the Linnean Society, 176, (4) 435–451. https://doi.org/10.1111/boj.12218.
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- Valcárcel, Virginia, Fiz-Palacios, Omar, and Wen, Jun. 2014. "The origin of the early differentiation of Ivies (Hedera L.) and the radiation of the Asian Palmate group (Araliaceae)." Molecular Phylogenetics and Evolution, 70 492–503. https://doi.org/10.1016/j.ympev.2013.10.016.
- Wen, Jun, Boggan, John, and Nie, Ze-Long. 2014. "Synopsis of Nekemias Raf., a segregate genus from Ampelopsis Michx. (Vitaceae) disjunct between eastern/southeastern Asia and eastern North America, with ten new combinations." PhytoKeys, (42) 11–19. https://doi.org/10.3897/phytokeys.42.7704.
- Wen, Jun, Zhang, Jian-Qiang, Nie, Ze-Long, Zhong, Yang, and Sun, Hang. 2014. "Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau." Frontiers in Genetics, 5. https://doi.org/10.3389/fgene.2014.00004.
- Xie, Lei, Yang, Zhi-Yun, Wen, Jun, Li, De-Zhu, and Yi, Ting-Shuang. 2014. "Biogeographic history of Pistacia (Anacardiaceae), emphasizing the evolution of the Madrean-Tethyan and the eastern Asian-Tethyan disjunctions." Molecular phylogenetics and evolution, 77 136–146. https://doi.org/10.1016/j.ympev.2014.04.006.
- Zhang, Jian-Qiang, Meng, Shi-Yong, Allen, Geraldine A., Wen, Jun, and Rao, Guang-Yuan. 2014. "Rapid radiation and dispersal out of the Qinghai-Tibetan Plateau of an alpine plant lineage Rhodiola (Crassulaceae)." Molecular phylogenetics and evolution, 77 147–158. https://doi.org/10.1016/j.ympev.2014.04.013.
- Zhang, Jian-Qiang, Meng, Shi-Yong, Wen, Jun, and Rao, Guang-Yuan. 2014. "Phylogenetic Relationships and Character Evolution of Rhodiola (Crassulaceae) based on Nuclear Ribosomal ITS and Plastid trnL-F and psbA-trnH Sequences." Systematic Botany, 39, (2) 441–451. https://doi.org/10.1600/036364414X680753.
- Zhou, Shiliang, Dong, Wenpan, Chen, Xiaoqing, Zhang, Xianchun, Wen, Jun, and Schneider, Harald. 2014. "How many species of bracken (Pteridium) are there? Assessing the Chinese brackens using molecular evidence." Taxon, 63, (3) 509–521. https://doi.org/10.12705/633.9.
- Chin, Siew-Wai, Lutz, Sue M., Wen, Jun, and Potter, Daniel. 2013. "The Bitter and the Sweet: Inference of Homology and Evolution of Leaf Glands in Prunus (Rosaceae) through Anatomy, Micromorphology, and Ancestral-Character State Reconstruction." International Journal of Plant Sciences, 174, (1) 27–46. https://doi.org/10.1086/668219.
- Deng, Tao, Zhang, Dai-Gui, Liu, Zhiwei, Tucker, Gordon C., Sun, Hang, Wen, Jun, and Nie, Ze-Long. 2013. "Oxalis wulingensis (Oxalidaceae), an unusual new species from central China." Systematic Botany, 38, (1) 154–161. https://doi.org/10.1600/036364413X661953.
- Fan, Deng-Mei, Chen, Jia-Hui, Meng, Ying, Wen, Jun, Huang, Jin-Ling, and Yang, Yong-Ping. 2013. "Molecular phylogeny of Koenigia L. (Polygonaceae: Persicarieae): Implications for classification, character evolution and biogeography." Molecular phylogenetics and evolution, 69, (3) 1093–1100. https://doi.org/10.1016/j.ympev.2013.08.018.
- Harris, Aj, Wen, Jun, and Xiang, Qiu-Yun. 2013. "Inferring the biogeographic origins of inter-continental disjunct endemics using a Bayes-DIVA approach." Journal of Systematics and Evolution, 51, (2) 117–133. https://doi.org/10.1111/jse.12007.
- Huang, Wei-Ping, Sun, Hang, Deng, Tao, Razafimandimbison, Sylvain G., Nie, Ze-Long, and Wen, Jun. 2013. "Molecular phylogenetics and biogeography of the eastern Asian-eastern North American disjunct Mitchella and its close relative Damnacanthus (Rubiaceae, Mitchelleae)." Botanical Journal of the Linnean Society, 171, (2) 395–412. https://doi.org/10.1111/j.1095-8339.2012.01321.x.
- Ickert-Bond, Stefanie and Wen, Jun. 2013. "A taxonomic synopsis of Altingiaceae with nine new combinations." PhytoKeys, 31 21–61. https://doi.org/10.3897/phytokeys.31.6251.
- Li, Rong, Ma, Peng-Fei, Wen, Jun, and Yi, Ting-Shuang. 2013. "Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications." PLoS ONE, 8, (10) e78568. https://doi.org/10.1371/journal.pone.0078568.
- Li, Rong and Wen, Jun. 2013. "Phylogeny and Biogeography of Dendropanax (Araliaceae), an Amphi-Pacific Disjunct Genus between Tropical/Subtropical Asia and the Neotropics." Systematic Botany, 38, (2) 536–551. https://doi.org/10.1600/036364413X666606.
- Liu, Xiao-Lin, Wen, Jun, Nie, Ze-Long, Johnson, Gabriel, Liang, Zong-Suo, and Chang, Zhao-Yang. 2013. "Polyphyly of the Padus group of Prunus (Rosaceae) and the evolution of biogeographic disjunctions between eastern Asia and eastern North America." Journal of Plant Research, 126, (3) 351–361. https://doi.org/10.1007/s10265-012-0535-1.
- Lu, Limin, Wang, Wei, Chen, Zhiduan, and Wen, Jun. 2013. "Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography." Molecular phylogenetics and evolution, 68 502–515. https://doi.org/10.1016/j.ympev.2013.04.023.
- Manchester, Steven R., Kapgate, Dashrath K., and Wen, Jun. 2013. "Oldest fruits of the grape family (Vitaceae) from the Late Cretaceous Deccan Cherts of India." American Journal of Botany, 100, (9) 1849–1859. https://doi.org/10.3732/ajb.1300008.
- Molina, Jeanmaire E., Wen, Jun, and Struwe, Lena. 2013. "Systematics and biogeography of the non-viny grape relative Leea (Vitaceae)." Botanical Journal of the Linnean Society, 171, (2) 354–376. https://doi.org/10.1111/j.1095-8339.2012.01320.x.
- Nie, Ze-Long, Deng, Tao, Meng, Ying, Sun, Hang, and Wen, Jun. 2013. "Post-Boreotropical dispersals explain the pantropical disjunction in Paederia (Rubiaceae)." Annals of Botany, 111, (5) 873–886. https://doi.org/10.1093/aob/mct053.
- Ren, Zhu-Mei, Zhong, Yang, Kurosu, Utako, Aoki, Shigeyuki, Ma, Enbo, von Dohlen, Carol D., and Wen, Jun. 2013. "Historical biogeography of Eastern Asian-Eastern North American disjunct Melaphidina aphids (Hemiptera: Aphididae: Eriosomatinae) on Rhus hosts (Anacardiaceae)." Molecular phylogenetics and evolution, 69, (3) 1146–1158. https://doi.org/10.1016/j.ympev.2013.08.003.
- Shi, Wenting, Wen, Jun, and Lutz, Susan. 2013. "Pollen morphology of the Maddenia clade of Prunus and its taxonomic and phylogenetic implications." Journal of Systematics and Evolution, 51, (2) 164–183. https://doi.org/10.1111/j.1759-6831.2012.00233.x.
- Wen, Jun, Kiapranis, Robert, and Lovave, Michael. 2013. "Ampelocissus asekii J. Wen, R. Kiapranis & M. Lovave, a new species of Vitaceae from Papua New Guinea." PhytoKeys, 21 1–6. https://doi.org/10.3897/phytokeys.21.4512.
- Wen, Jun, Lu, L. M., and Boggan, J. K. 2013. "Diversity and evolution of Vitaceae in the Philippines." Philippine Journal of Science, 142, (Special Issue) 223–244.
- Wen, Jun, Ree, Richard H., Ickert-Bond, Stefanie, Nie, Zelong, and Funk, Vicki Ann. 2013. "Biogeography: Where do we go from here?" Taxon, 62, (5) 912–927. https://doi.org/10.12705/625.15.
- Wen, Jun, Xiong, Zhiqiang, Nie, Ze-Long, Mao, Likai, Zhu, Yabing, Kan, Xian-Zhao, Ickert-Bond, Stefanie, Gerrath, Jean, Zimmer, Elizabeth Anne, and Fang, Xiao-Dong. 2013. "Transcriptome Sequences Resolve Deep Relationships of the Grape Family." PLoS ONE, 8, (9) e74394. https://doi.org/10.1371/journal.pone.0074394.
- Zhang, Jing-Bo, Li, Rui-Qi, Xiang, Xiao-Guo, Manchester, Steven R., Lin, Li, Wang, Wei, Wen, Jun, and Chen, Zhi-Duan. 2013. "Integrated Fossil and Molecular Data Reveal the Biogeographic Diversification of the Eastern Asian-Eastern North American Disjunct Hickory Genus (Carya Nutt.)." PLoS ONE, 8, (7) e70449. https://doi.org/10.1371/journal.pone.0070449.
- Zhou, Zhuo, Hong, Deyuan, Niu, Yang, Li, Guodong, Nie, Zelong, Wen, Jun, and Sun, Hang. 2013. "Phylogenetic and biogeographic analyses of the Sino-Himalayan endemic genus Cyananthus (Campanulaceae) and implications for the evolution of its sexual system." Molecular phylogenetics and evolution, 68, (3) 482–497. https://doi.org/10.1016/j.ympev.2013.04.027.
- Zhu, Wei-Dong, Nie, Ze-Long, Wen, Jun, and Sun, Hang. 2013. "Molecular phylogeny and biogeography of Astilbe (Saxifragaceae) in Asia and eastern North America." Botanical Journal of the Linnean Society, 171, (2) 377–394. https://doi.org/10.1111/j.1095-8339.2012.01318.x.
- Liu, Xiu-Qun, Ickert-Bond, Stefanie, Chen, Long-Qing, and Wen, Jun. 2012. "Molecular phylogeny of Cissus L. of Vitaceae (the grape family) and evolution of its pantropical intercontinental disjunctions." Molecular phylogenetics and evolution, 66, (1) 43–53. https://doi.org/10.1016/j.ympev.2012.09.003.
- Lu, Jin-Mei, Wen, Jun, Lutz, Sue M., Wang, Yi-Ping, and Li, De-Zhu. 2012. "Phylogenetic relationships of Chinese Adiantum based on five plastid markers." Journal of Plant Research, 125, (2) 237–249. https://doi.org/10.1007/s10265-011-0441-y.
- Lu, Limin, Wen, Jun, and Chen, Zhiduan. 2012. "A combined morphological and molecular phylogenetic analysis of Parthenocissus (Vitaceae) and taxonomic implications." Botanical Journal of the Linnean Society, 168, (1) 43–63. https://doi.org/10.1111/j.1095-8339.2011.01186.x.
- Mitchell, Anthony, Li, Rong, Brown, Joseph W., Schoenberger, Ines, and Wen, Jun. 2012. "Ancient divergence and biogeography of Raukaua (Araliaceae) and close relatives in the southern hemisphere." Australian Systematic Botany, 25, (6) 432–446. https://doi.org/10.1071/SB12020.
- Nie, Ze-Long, Funk, Vicki Ann, Sun, Hang, Deng, Tao, Meng, Ying, and Wen, Jun. 2012. "Molecular phylogeny of Anaphalis (Asteraceae, Gnaphalieae) with biogeographic implications in the Northern Hemisphere." Journal of Plant Research, 126, (1) 17–32. https://doi.org/10.1007/s10265-012-0506-6.
- Nie, Ze-Long, Sun, Hang, Manchester, Steven R., Meng, Ying, Luke, Quentin, and Wen, Jun. 2012. "Evolution of the intercontinental disjunctions in six continents in the Ampelopsis clade of the grape family (Vitaceae)." BMC Evolutionary Biology, 12, (1) 1–17. https://doi.org/10.1186/1471-2148-12-17.
- Wen, Jun and Shi, Wenting. 2012. "Revision of the Maddenia clade of Prunus (Rosaceae)." PhytoKeys, 11 39–59. https://doi.org/10.3897/phytokeys.11.2825.
- Zhou, Zhuo, Wen, Jun, Li, Guodong, and Sun, Hang. 2012. "Phylogenetic assessment and biogeographic analyses of tribe Peracarpeae (Campanulaceae)." Plant Systematics and Evolution, 298, (2) 323–336. https://doi.org/10.1007/s00606-011-0547-7.
- Zhu, Wei-Dong, Nie, Ze-Long, Wen, Jun, and Sun, Hang. 2012. "Molecular phylogeny and biogeography of Astilbe (Saxifragaceae) in Asia and eastern North America." Botanical Journal of the Linnean Society, 171, (2) 377–394. https://doi.org/10.1111/j.1095-8339.2012.01318.x.
- Zimmer, Elizabeth A. and Wen, Jun. 2012. "Using nuclear gene data for plant phylogenetics: progress and prospects." Molecular phylogenetics and evolution, 65, (2) 774–785. https://doi.org/10.1016/j.ympev.2012.07.015.
- Chen, P. T., Wen, Jun, and Chen, L. Q. 2011. "Spatial and temporal diversification of Tetrastigma Planch. (Vitaceae)." Gardens' Bulletin Singapore, 63, (1) 313–333.
- Chen, Pingting, Chen, Longqing, and Wen, Jun. 2011. "The first phylogenetic analysis of Tetrastigma (Miq.) Planch., the host of Rafflesiaceae." Taxon, 60 499–512.
- Liu, Qing, Triplett, Jimmy K., Wen, Jun, and Peterson, Paul M. 2011. "Allotetraploid origin and divergence in Eleusine (Chloridoideae, Poaceae): evidence from low-copy nuclear gene phylogenies and a plastid gene chronogram." Annals of Botany, 108, (7) 1287–1298. https://doi.org/10.1093/aob/mcr231.
- Lu, Jin-Mei, Li, De-Zhu, Lutz, Sue M., Soejima, Akiko, Yi, Tingshuang, and Wen, Jun. 2011. "Biogeographic disjunction between eastern Asia and North America in the Adiantum pedatum complex (Pteridaceae)." American Journal of Botany, 98, (10) 1680–1963. https://doi.org/10.3732/ajb.1100125.
- Luebert, Federico, Brokamp, Grischa, Wen, Jun, Weigend, Maximilian, and Hilger, Hartmut H. 2011. "Phylogenetic relationships and morphological diversity in Neotropical Heliotropium (Heliotropiaceae)." Taxon, 60 663–680.
- Ren, Hui, Lu, Li-Min, Soejima, Akiko, Luke, Quentin, Zhang, Dian-Xiang, Chen, Zhi-Duan, and Wen, Jun. 2011. "Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences." Taxon, 60 629–637.
- Shui, Yu-Min, Wen, Jun, and Chen, Wen-Hong . 2011. "Parashorea chinensis Wang Hsie and P. chinensis var. kwangsiensis Lin Chi: Two exceptional cases of names with a corporate authorship." Taxon, 60, (4) 1165–1167.
- Wen, Jun. 2011. "Systematics and Biogeography of Aralia L. (Araliaceae): Revision of Aralia Sects. Aralia, Humiles, Nanae, and Sciadodendron." Contributions from the United States National Herbarium, 57 1–172.
- Xie, Lei, Wen, Jun, and Li, Liang-Qian. 2011. "Phylogenetic Analyses of Clematis (Ranunculaceae) Based on Sequences of Nuclear Ribosomal ITS and Three Plastid Regions." Systematic Botany, 36, (4) 907–921. https://doi.org/10.1600/036364411X604921.
- Zhang, Jian-Wen, Nie, Ze-Long, Wen, Jun, and Sun, Hang. 2011. "Molecular phylogeny and biogeography of three closely related genera, Soroseris, Stebbinsia, and Syncalathium (Asteraceae, Cichorieae), endemic to the Tibetan Plateau, SW China." Taxon, 60, (1) 15–26.
- Zuo, Y., Chen, Z., Kondo, K., Funamoto, T., Wen, Jun, and Zhou, S. 2011. "DNA barcoding of Panax species." Planta Medica, 72, (2) 182–187. https://doi.org/10.1055/s-0030-1250166.
- Baird, Kristen E., Funk, Vicki Ann, Wen, Jun, and Weeks, Andrea. 2010. "Molecular phylogenetic analysis of Leibnitzia Cass. (Asteraceae: Mutisieae: Gerbera-complex), an Asian–North American disjunct genus." Journal of Systematics and Evolution, 48, (3) 161–174. https://doi.org/10.1111/j.1759-6831.2010.00077.x.
- Chen, Jia-Hui, Sun, Hang, Wen, Jun, and Yang, Yong-Ping. 2010. "Molecular phylogeny of Salix L. (Salicaceae) inferred from three chloroplast datasets and its systematic implications." Taxon, 59, (1) 29–37.
- Chin, Siew-Wai, Wen, Jun, Johnson, Gabriel P., and Potter, Dan. 2010. "Merging Maddenia with the morphologically diverse Prunus (Rosaceae)." Botanical Journal of the Linnean Society, 164, (3) 236–245. https://doi.org/10.1111/j.1095-8339.2010.01083.x.
- Nie, Ze-Long, Sun, Hang, Chen, Zhi-Duan, Meng, Ying, Manchester, Steven R., and Wen, Jun. 2010. "Molecular phylogeny and biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America." Am.J.Bot., 97, (8) 1342–1353. https://doi.org/10.3732/ajb.1000085.
- Tu, Tieyao, Volis, Sergei, Dillon, Michael O., Sun, Hang, and Wen, Jun. 2010. "Dispersals of Hyoscyameae and Mandragoreae (Solanaceae) from the New World to Eurasia in the early Miocene and their biogeographic diversification within Eurasia." Molecular Phylogenetics and Evolution, 57, (3) 1226–1237. https://doi.org/10.1016/j.ympev.2010.09.007.
- Xie, Lei, Yi, Ting-Shuang, Li, Rong, Li, De-Zhu, and Wen, Jun. 2010. "Evolution and biogeographic diversification of the witch-hazel genus (Hamamelis L., Hamamelidaceae) in the Northern Hemisphere." Molecular phylogenetics and evolution, 56, (2) 675–689. https://doi.org/10.1016/j.ympev.2010.02.018.
- Xu, Xinwei, Walters, Christina, Antolin, Michael F., Alexander, Mara L., Lutz, Sue M., Ge, Song, and Wen, Jun. 2010. "Phylogeny and biogeography of the eastern Asian-North American disjunct wild-rice genus (Zizania L., Poaceae)." Molecular phylogenetics and evolution, 55, (3) 1008–1017. https://doi.org/10.1016/j.ympev.2009.11.018.
- Zhang, Xue-Mei, Wen, Jun, Dao, Zhi-Ling, Motley, Timothy J., and Long, Chun-Lin. 2010. "Genetic variation and conservation assessment of Chinese populations of Magnolia cathcartii (Magnoliaceae), a rare evergreen tree from the South-Central China hotspot in the Eastern Himalayas." Journal of Plant Research, 123, (3) 321–331. https://doi.org/10.1007/s10265-009-0278-9.
- Dillon, Michael O., Tu, Tieyao, Xie, L., and Wen, Jun. 2009. "Biogeographic diversification in Nolana (Solanaceae), a ubiquitous member of the Atacama and Peruvian Deserts along the western coast of South America." Journal of Systematics and Evolution, 47, (5) 457–476. https://doi.org/10.1111/j.1759-6831.2009.00040.x.
- Luebert, F., Wen, Jun, and Dillon, M. O. 2009. "Systematic placement and biogeographical relationships of the monotypic genera Gypothamnium and Oxyphyllum (Asteraceae: Mutisioideae) from the Atacama Desert." Botanical Journal of the Linnean Society, 159 32–51.
- Nie, Z. L., Wen, Jun, and Sun, H. 2009. "AFLP analysis of Phryma (Phrymaceae) disjunct between eastern Asia and eastern North America." Acta Botanica Yunnanica, 31 289–295.
- Nie, Ze-Long, Sun, Hang, Meng, Ying, and Wen, Jun. 2009. "Phylogenetic analysis of Toxicodendron (Anacardiaceae) and its biogeographic implications on the evolution of north temperate and tropical intercontinental disjunctions." Journal of Systematics and Evolution, 47, (5) 416–430. https://doi.org/10.1111/j.1759-6831.2009.00045.x.
- Ren, Zhumei, Zhu, Bin, Ma, Enbo, Wen, Jun, Tu, Tieyao, Cao, Ying, Hasegawa, Masami, and Zhong, Yang. 2009. "Complete nucleotide sequence and gene arrangement of the mitochondrial genome of the crab-eating frog Fejervarya cancrivora and evolutionary implications." Gene, 441, (1-2) 148–155. https://doi.org/10.1016/j.gene.2008.09.010.
- Sun, B. L., Zhang, C. Q., Lowry, P. P., and Wen, Jun. 2009. "Cryptic dioecy in Nyssa yunnanensis (Nyssaceae), a critically endangered species from tropical eastern Asia." Annals of the Missouri Botanical Garden, 96 672–684.
- Wen, Jun and Ickert-Bond, Stefanie M. 2009. "Evolution of the Madrean–Tethyan disjunctions and the North and South American amphitropical disjunctions in plants." Journal of Systematics and Evolution, 47, (5) 331–348. https://doi.org/10.1111/j.1759-6831.2009.00054.x.
- Wen, Jun, Xiang , Qiu-Yun (Jenny), Qian, Hong, Li, Jianhua, Wang, Xiao-Quan, and Ickert-Bond, Stefanie M. 2009. "Intercontinental and intracontinental biogeography-patterns and methods." Journal of Systematics and Evolution, 47, (5) 327–330. https://doi.org/10.1111/j.1759-6831.2009.00052.x.
- Xie, Li, Wagner, Warren L., Rhee, Richard H., Berry, Paul E., and Wen, Jun. 2009. "Molecular phylogeny, divergence time estimates, and historical biogeography of Circaea (Onagraceae) in the Northern Hemisphere." Molecular phylogenetics and evolution, 53 995–1009.
- Chen, Xiao-Qing, Wang, Jianxiu, Tian, Hong-Li, Zhang, Xianchun, Wen, Jun, and Zhou, Shi-Liang. 2008. "Development of microsatellite markers for the bracken fern, Pteridium aquilinum." Molecular Ecology Resources, 8, (6) 1491–1493. https://doi.org/10.1111/j.1755-0998.2008.02233.x.
- Luebert, F. and Wen, Jun. 2008. "Phylogenetic analysis and evolutionary diversification of Heliotropium sect. Cochranea (Heliotropiaceae) in the Atacama Desert." Systematic Botany, 33 390–402.
- Meng, Ying, Wen, Jun, Nie, Ze-Long, Sun, Hang, and Yang, Yong-Ping. 2008. "Phylogeny and biogeographic diversification of Maianthemum (Ruscaceae: Polygonatae)." Molecular phylogenetics and evolution, 49, (2) 424–434. https://doi.org/10.1016/j.ympev.2008.07.017.
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- Tian, Hong-Li, Chen, Xiao-Qing, Wang, Jian-Xiu, Xue, Jian-Hua, Wen, Jun, Mitchell, Grant, and Zhou, Shi-Liang. 2008. "Development and characterization of microsatellite loci for lotus (Nelumbo nucifera)." Conservation Genetics, 9, (5) 1385–1388. https://doi.org/10.1007/s10592-007-9503-z.
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- Xu, X. -W, Ke, W. -D, Yu, X. -P, Wen, Jun, and Ge, S. 2008. "A preliminary study on population genetic structure and phylogeography of the wild and cultivated Zizania latifolia (Poaceae) based on Adh1a sequences." Theoretical and Applied Genetics, 116 835–843.
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- Ickert-Bond, S., Pigg, K. B., and Wen, Jun. 2007. "Comparative infructescence morphology in Altingia Noronha and discordance between morphological and molecular phylogenies." American Journal of Botany, 94 1094–1115.
- Nie, Z. L., Wen, Jun, and Sun, H. 2007. "Phylogeny and biogeography of Sassafras (Lauraceae) disjunct between eastern Asia and eastern North America." Plant Systematics and Evolution, 267 191–203.
- Wen, Jun, Loc, P. K., Hiep, N. T., Regalado, J., Averyanov, L. V., and Lee, C. 2007. "An unusual new species of Trevesia from Vietnam and its implications on generic delimitation in Araliaceae." Taxon, 56, (4) 1261–1268. https://doi.org/10.2307/25065918.
- Wen, Jun, Nie, L., Soejima, A., and Meng, Y. 2007. "Phylogeny of Vitaceae based on the nuclear GAII gene sequences." Canadian Journal of Botany, 85 731–745.
- Yi, T. S., Miller, A. J., and Wen, Jun. 2007. "The phylogeny of Rhus (Anacradiaceae) based on sequences of nuclear NIA-i3 intron and chloroplast trnC-D suggests reticulate evolution." Systematic Botany, 32 379–391.
- Yoo, K. O. and Wen, Jun. 2007. "Phylogeny of Carpinus and Coryloideae (Betulaceae) based on chloroplast and nuclear ribosomal sequence data." Plant Systematics and Evolution, 267 25–35.
- Ickert-Bond, A. and Wen, Jun. 2006. "Phylogeny and biogeography of Altingiaceae: evidence from combined analysis of five non-coding chloroplast regions." Molecular Phylogenetics and Evolution, 39 512–528.
- Nie, Z. L., Sun, H., Li, H., and Wen, Jun. 2006. "Intercontinental biogeography of subfamily Orontioideae (Symplocarpus, Lysichiton, and Orontium) of Araceae in eastern Asia and North America." Molecular Phylogenetics and Evolution, 40 155–165.
- Nie, Z., Sun, H., Olmstead, R. G., and Wen, Jun. 2006. "Evolution of biogeographic disjunction between eastern Asia and eastern North America in Phryma (Phrymaceae)." American Journal of Botany, 93 1343–1356.
- Soejima, A. and Wen, Jun. 2006. "Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers." American Journal of Botany, 93 278–287.
- Wen, Jun and Chen, D. 2006. "Cayratia lanceolata (C.L. Li) J. Wen & Z.-D. Chen, a new nomenclatural combination in Vitaceae from China." Acta Botanica Yunnanica, 28 471–472.
- Wen, Jun and Lowry, P. P., II. 2006. "New species and new combinations in Brassaiopsis (Araliaceae) from Vietnam and southwestern China." Adansonia, 28 181–190.
- Zhou, S. L., Funamoto, T., Huang, H., and Wen, Jun. 2006. "Discovery of Abelia spathulata (Caprifoliaceae) in eastern China." Acta Phytotaxonomica Sinica, 44 467–470.
- Zhou, S. L., Renner, S. S., and Wen, Jun. 2006. "Molecular systematics and inter- and intracontinental biogeography of Calycanthaceae." Molecular Phylogenetics and Evolution, 39 1–15.
- Zhu, Y. P., Wen, Jun, and Zhang, Y. 2006. "Evolutionary relationships and diversification of Stachyuraceae based on sequences of four chloroplast regions and nuclear ribosomal ITS region." Taxon, 55 931–940.
- Ickert-Bond, S. M., Pigg, K. B., and Wen, Jun. 2005. "Comparative infructescence morphology and anatomy in Liquidambar L. (Altingiaceae) and its taxonomic and phylogenetic significance." American Journal of Botany, 92 1234–1255.
- Mitchell, A. and Wen, Jun. 2005. "Phylogeny of Brassaiopsis (Araliaceae), a widespread and morphologically diverse genus in Asia." Systematic Botany, 30 872–886.
- Nie, Z. L., Wen, Jun, Gu, Zhi-Jian, Boufford, David E., and Sun, H. 2005. "Polyploidy in flora of the Hengduan Mountains Hotspot, Southwestern China." Annals of the Missouri Botanical Garden, 92 275–306.
- Nie, Z. L., Wen, Jun, Sun, H., and Bartholomew, B. 2005. "Monophyly of Kelloggia Torrey ex Benth. (Rubiaceae) and evolution of its intercontinental disjunction between western North America and eastern Asia." American Journal of Botany, 92 642–653.
- Plunkett, G. M., Lowry, P. P., II, Frodin, D. G., and Wen, Jun. 2005. "Phylogeny and geography of Schefflera: pervasive polyphyly in the largest genus of Araliaceae." Annals of the Missouri Botanical Garden, 92 202–224.
- Zhou, S. L., Xiong, G. M., Li, Z. Y., and Wen, Jun. 2005. "Loss of genetic diversity of domesticated Panax notoginseng F.H. Chen as evidenced by ITS sequence and AFLP: a comparative study with P. stipuleanatus H.T. Tsai & K.M. Feng." Journal of Integrative Plant Biology, 47 107–115.
- Lee, C. and Wen, Jun. 2004. "Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants." Molecular Phylogenetics and Evolution, 31 894–903.
- Lowry, P. P., II, Plunkett, G. M., and Wen, Jun. 2004. "Generic relationships in Araliaceae: looking into the crystal ball." South African Journal of Botany, 70 382–392.
- Mitchell, A. and Wen, Jun. 2004. "Phylogenetic utility and evidence for multiple copies of granule-bound starch synthase I (GBSSI) in the Araliaceae." Taxon, 53 29–41.
- Pandey, A. K., Wen, Jun, and Pathak, M. K. 2004. "Evolutionary relationships of Araliaceae in India inferred from sequences of internal inscribed spacer (ITS) regions of nuclear ribosomal DNA." Rheedea, 14 1–8.
- Pigg, K. B., Ickert-Bond, S. M., and Wen, Jun. 2004. "Anatomically preserved Liquidambar (Altingiaceae) from the Middle Miocene Yakima Canyon, Washington State, USA, and its biogeographic implications." American Journal of Botany, 91 499–509.
- Plunkett, G. M., Wen, Jun, and Lowry, P. P., II. 2004. "Infrafamilial relationships in Araliaceae: insights from nuclear (ITS) and plastid (trnL-trnF) sequence data." Plant Systematics and Evolution, 245 1–39.
- Wen, Jun. 2004. "Systematics and biogeography of Aralia L. sect. Dimorphanthus (Miq.) Miq. (Araliaceae)." Cathaya, 15-16 1–187.
- Wen, Jun, Lowry, P. P., II, and Zech, J. C. 2004. "Osmorhiza bipatriata (Apiaceae) in Texas: taxonomic status and conservation considerations." SIDA, Contributions to Botany, 21 501–506.
- Xiang, Q. Y., Zhang, H., Ricklefs, Robert E., Qian, H., Chen, D., Wen, Jun, and Li, Jinhong. 2004. "Regional differences in rates of plant speciation and molecular evolution: a comparison between eastern Asia and eastern North America." Evolution, 58 2175–2184.
- Yi, T. S., Lowry, P. P., II, Plunkett, G. M., and Wen, Jun. 2004. "Chromosomal evolution in Araliaceae and close relatives." Taxon, 53 987–1005.
- Zhou, S. L., Funamoto, T., and Wen, Jun. 2004. "Species relationships in Abelia sect. Abelia (Caprifoliaceae) in East Asia and verification of A. serrata in China: evidence from AFLP analysis." Acta Botanica Yunnanica, 26 405–412.
- Zhou, S. L., Wen, Jun, and Hong, De-Yuan. 2004. "Allozyme diversity in Eleutherococcus senticosus and E. brachypus (Araliaceae) from Chin and its implications for conservation." SIDA, Contributions to Botany, 21 993–1007.
- Ackerfield, J. R. and Wen, Jun. 2003. "Evolution of Hedera(the ivy genus, Araliaceae): insights from chloroplast DNA data." International Journal of Plant Sciences, 164 593–602.
- Wen, Jun, Lee, C., Lowry, P. P., II, and Hiep, N. T. 2003. "Inclusion of the Vietnamese endemic genus Grushvitzkya in Brassaiopsis(Araliaceae): Evidence from nuclear ribosomal ITS and chloroplast ndhF sequences." Botanical Journal of the Linnean Society, 142 455–463.
- Ackerfield, J. R. and Wen, Jun. 2002. "A morphometric analysis of Hedera L. (the ivy genus, Araliaceae) and its taxonomic implications." Adansonia, 24 197–212.
- Mueller, G., Wen, Jun, and Davion, E. 2002. "The great divide: living in two places at once." In The Field, 2002 2–3.
- Pandey, A. K., Lee, C., and Wen, Jun. 2002. "A molecular systematic study of Aralia L. and Panax L. (Araliaceae) in India, and its taxonomic implications." Rheedea, 12, (2) 89–99.
- Wen, Jun. 2002. "Revision of Aralia sect. Pentapanax (Seem.) J. Wen (Araliaceae)." Cathaya, 11-12 1–116.
- Wen, Jun, Deng, L., and Shi, X. 2002. "Aralia lihengiana J. Wen, L. Deng & X. Shi, a new species of Araliaceae from China." Adansonia, 24 217–220.
- Wen, Jun, Hiep, N. T., Hoan, D. T., and Huong, N. T. 2002. "Brassaiopsis producta (Dunn) C.-B. Shang, a new record of Araliaceae from Vietnam." Adansonia, 24 117–119.
- Wen, Jun, Lee, C., and Deng, Y. 2002. "On merging Hunaniopanax with Aralia (Araliaceae), with description of a new taxon and additional nomenclatural changes in Asian Araliaceae." Acta Botanica Yunnanica, 24 557–568.
- Wen, Jun and Lowry, P. P., II. 2002. "Aralia hiepiana J. Wen & Lowry, a new species of Araliaceae from Vietnam." Adansonia, 24 213–216.
- Wen, Jun, Lowry, P. P., II, Walck, J., and Yoo, O. 2002. "Phylogenetic and biogeographic diversifications of Osmorhiza(Apiaceae)." Annals of the Missouri Botanical Garden, 89 414–428.
- Wen, Jun, Pandey, A. K., and Pathak, M. K. 2002. "Revision of Aralia L. (Araliaceae) in India." Rheedea, 12, (1) 1–20.
- Yoo, K. O., Lowry, P. P., II, and Wen, Jun. 2002. "Discordance of chloroplast and nuclear ribosomal DNA data in Osmorhiza (Apiaceae)." American Journal of Botany, 89 966–971.
- Yoo, K. O. and Wen, Jun. 2002. "Phylogeny and biogeography of Carpinus and the Coryloideae (Betulaceae)." International Journal of Plant Sciences, 163 641–650.
- Jebb, M. and Wen, Jun. 2001. "Aralia fragrans (D. Don) Jebb & J. Wen, a new combination in Araliaceae." Adansonia, 23 311–314.
- Lee, S. and Wen, Jun. 2001. "A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) based on ITS sequences of nuclear ribosomal DNA." American Journal of Botany, 88 150–160.
- Miller, A. J., Young, D. A., and Wen, Jun. 2001. "A phylogenetic analysis of Rhus (Anacardiaceae): phylogenetic and biogeographic inferences based on ITS sequence data." International Journal of Plant Sciences, 162 1401–1407.
- Wen, Jun. 2001. "Evolution of eastern Asian and eastern North American biogeographic pattern: a few additional issues." International Journal of Plant Sciences, 162 S117–S122.
- Wen, Jun. 2001. "Evolution of the Aralia-Panax complex (Araliaceae) as inferred from nuclear ribosomal ITS sequences." Edinburgh Journal of Botany, 58 183–200.
- Wen, Jun, Lowry, P. P., II, and Esser, J. 2001. "Aralia kingdon-wardii J. Wen, Lowry & Esser, a new name for an Asian Araliaceae." Adansonia, 23 307–310.
- Wen, Jun, Plunkett, G. M., Mitchell, A., and Wagstaff, S. 2001. "Evolution of Araliaceae: a phylogenetic analysis based on the ITS sequences of nrDNA." Systematic Botany, 26 144–167.
- Whitcher, I. N. and Wen, Jun. 2001. "Systematics and biogeography of Corylus (Betulaceae): inferences from ITS sequences." Systematic Botany, 26 283–298.
- Yoo, K. O., Malla, K. J., and Wen, Jun. 2001. "Chloroplast DNA variation of Panax in Nepal and its taxonomic implications." Brittonia, 53 447–453.
- Choi, H. K. and Wen, Jun. 2000. "A phylogenetic analysis of Panax (Araliaceae): integrating evidence of chloroplast DNA and the ITS sequences of nrDNA." Plant Systematics and Evolution, 224 109–120.
- Wen, Jun. 2000. "Internal Transcribed Spacer phylogeny of the Asian-eastern North American disjunct Aralia sect. Dimorphanthus (Araliaceae) and its biogeographic implications." International Journal of Plant Sciences, 161 959–966.
- Wen, Jun. 2000. "Revision of some woody taxa of Aralia L. (Araliaceae) from China." Acta Phytotaxonomica Sinica, 38 1–9.
- Wen, Jun. 1999. "Evolution of eastern Asian and eastern North American disjunct pattern in flowering plants." Annual Review of Ecology and Systematics, 30 421–455.
- Wen, Jun and Nowicke, Joan W. 1999. "Pollen ultrastructure of Panax (the ginseng genus, Araliaceae), an eastern Asian and eastern North American disjunct genus." American Journal of Botany, 86 1624–1636.
- Wen, Jun and Shi, S. 1999. "A phylogenetic and biogeographic study of Hamamelis (Hamamelidaceae), an eastern Asian and eastern North American disjunct genus." Biochemical Systematics and Ecology, 27 55–66.
- Shi, S., Chang, T., Chen, Y., Qu, L. H., and Wen, Jun. 1998. "Phylogeny of the Hamamelidaceae based on the ITS sequences of nuclear ribosomal DNA." Biochemical Systematics and Ecology, 26 55–69.
- Shi, S., Wen, Jun, Zhu, F., Zhu, B., and Huang, Y. 1998. "Sequence analyses of ITS regions of nrDNA from Siphocranion nudipes Kudo (Lamiaceae)." Acta Scientiarum Naturalium Universitatis Sunyatseni, 37, (2) 52–56.
- Wen, Jun. 1998. "Evolution of the eastern Asian and eatern North American disjunct pattern: insights from phylogenetic studies." Korean Journal of Plant Taxonomy, 28 63–81.
- Wen, Jun, Shi, S., Jansen, R. K., and Zimmer, Elizabeth Anne. 1998. "Phylogeny and biogeography of Aralia sect. Aralia (Araliaceae)." American Journal of Botany, 85 866–875.
- Whitcher, I. N. and Wen, Jun. 1998. "A new distribution of Corylus wangii (Betulaceae) in Sichuan Province, China." Journal of Wuhan Botanical Research, 16 315–316.
- Hoffmann-Sommergruber, K., Vanek-Krebitz, M., Radauer, C., Wen, Jun, Ferreira, F., Scheiner, O., and Breiteneder, H. 1997. "Genomic characterization of members of the BET V 1 family: genes coding for allergens and pathogenesis-related proteins share intron positions." Gene, 197 91–100.
- Wen, Jun, Vanek-Krebitz, M., Hoffmann-Sommergruber, K., Scheiner, O., and Breiteneider, H. 1997. "The potential of Betv1 homologues, a nuclear multigene family, as phylogenetic markers in flowering plants." Molecular Phylogenetics and Evolution, 8 317–333.
- Wen, Jun, Jansen, R. K., and Kilgore, K. 1996. "Evolution of the eastern Asian and eastern North American disjunct genus Symplocarpus (Araceae): insights from chloroplast DNA restriction site data." Biochemical Systematics and Ecology, 24 735–747.
- Wen, Jun and Zimmer, Elizabeth Anne. 1996. "Phylogeny of Panax L. (the Ginseng Genus, Araliaceae): Inference from ITS sequences of nuclear ribosomal DNA." Molecular Phylogenetics and Evolution, 5 167–177.
- Wen, Jun and Jansen, R. K. 1995. "Morphological and molecular comparisons of Campsis grandiflora and C. radicans (Bignoniaceae0, an eastern Asian and eastern North American vicariad species pair." Plants Systematics and Evolution, 196 173–183.
- Wen, Jun. 1994. "New taxa and nomenclatural changes in Aralia (Araliaceae)." Novon, 4 40–43.
- Tseng, C. C., Wen, Jun, Hedges, K. L., and Chen, Y. C. 1993. "Protein profile as a taxonomic character in Aralia (Araliaceae)." Cathaya, 5 69–79.
- Wen, Jun. 1993. "A new species of Staphylea (Staphyleaceae) from Sichuan, China." Brittonia, 45 218–219.
- Wen, Jun. 1993. "Generic delimitation of Aralia (Araliaceae)." Brittonia, 45 47–55.
- Wen, Jun and Stuessy, T. F. 1993. "Phylogeny and biogeography of Nyssa (Cornaceae)." Systematic Botany, 18 68–79.
- Wen, Jun and Reveal, J. L. 1992. "On the typification of the Linnean species of Aralia (Araliaceae)." Taxon, 41 69–75.
Dataset
- Li, Qin-Qin, Yu, Yan, Zhang, Zhi-Ping, and Wen, Jun. 2021. [Dataset] Comparison among the chloroplast genomes of five species of Chamaerhodos (Rosaceae: Potentilleae): phylogenetic implications. Distributed by Dryad. https://doi.org/10.5061/DRYAD.76HDR7SWC.
- Ke, Xiu-Rong, Morales-Briones, Diego F., Wang, Hong-Xin, Sun, Qing-Hui, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2021. [Dataset] Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation and biogeography of the Sino-Japanese disjunctive Diabelia (Caprifoliaceae). Distributed by Dryad. https://doi.org/10.5061/DRYAD.XD2547DHW.
- Sun, Qing-Hui, Morales-Briones, Diego F., Wang, Hong-Xin, Landis, Jacob B., Wen, Jun, and Wang, Hua-Feng. 2021. [Dataset] Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread hybridization. Distributed by Dryad. https://doi.org/10.5061/DRYAD.V6WWPZGX8.
- Li, Rong and Wen, Jun. 2016. [Dataset] Phylogeny and diversification of Chinese Araliaceae based on nuclear and plastid DNA sequence data. Distributed by Washington, DC: Smithsonian National Museum of Natural History. https://doi.org/10.5479/data_nh/10088/31958.
Book Chapter
- Duan, Lei, Harris, Aj, Mao, Li-Yan, Zhang, Zhi-Rong, Arslan, Emine, Ertuğrul, Kuddisi, Loc, Phan Ke, Hayashi, Hiroaki, Wen, Jun, and Chen, Hong-Feng. 2020. "Chloroplast phylogenomics and biogeography of liquorice (Leguminosae: Glycyrrhiza)." In Prime Archives in Plant Sciences. Chen, Grace Q., editor. Vide Leaf. https://doi.org/10.37247/PAPS.1.2020.11.
- Moore, M. O. and Wen, Jun. 2016. "Vitaceae." In Magnoliophyta: Vitaceae to Garryaceae. 3–23. Oxford, England: Oxford University Press. In Flora of North America North of Mexico, vol. 12.
- Wen, Jun, Egan, Ashley N., Dikow, Rebecca B., and Zimmer, Elizabeth Anne. 2015. "Utility of transcriptome sequencing for phylogenetic inference and character evolution." In Next-generation sequencing in plant systematics. Hörandl, E. and Appelhans, M. S., editors. 51–91. International Association for Plant Taxonomy (IAPT). https://doi.org/10.14630/000003.
- Hong, D. Y. and Wen, Jun. 2011. "Phrymaceae." In Flora of China. Wu, C. Y., Hong, D., and Raven, Peter H., editors. 493–494. Beijing; St. Louis: Missouri Botanical Garden. 19
- Wen, Jun, Ickert-Bond, S., Nie, Z. -L, and Li, R. 2010. "Timing and modes of evolution of eastern Asian - North American biogeographic disjunctions in seed plants." In Darwin's Heritage Today : Proceedings of the Darwin 2010 Beijing International Conference. Long, M., Gu, H., and Zhou, Z., editors. 252–269. Beijing: Higher Education Press.
- Li, Dazhou, Cai , J., and Wen, Jun. 2008. "Tapisciaceae." In Flora of China; Vol. 11. Wu, C. Y., Hong, De-Yuan, and Raven, Peter H., editors. 496. Beijing; St. Louis: Science Press; Missouri Botanical Garden.
- Li, Dazhou, Cai , J., and Wen, Jun. 2008. "Staphyleaceae." In Flora of China ; Vol. 11. Wu, C. Y., Hong, De-Yuan, and Raven, Peter H., editors. 498–504. Beijing; St. Louis: Science Press; Missouri Botanical Garden.
- Chen, Z. D., Ren, H., and Wen, Jun. 2007. "Vitaceae." In Flora of China. Wu, C. Y., Hong, De-Yuan, and Raven, Peter H., editors. 173–222. St. Louis, USA: Sceince Press, Beijing and Missouri Botanical Garden Press.
- Chen, Z. D. and Wen, Jun. 2007. "Leeaceae." In Flora of China. Wu, C. Y., Hong, De-Yuan, and Raven, Peter H., editors. 169. St. Louis, USA: Science Press, Beijing and Missouri Botanical Garden Press.
- Wen, Jun. 2007. "Leeaceae." In Families and Genera of Vascular Plants, vol. 9. Kubitzki, K., editor. 221–225.
- Wen, Jun. 2007. "Vitaceae." In Families and Genera of Vascular Plants, vol. 9. Kubitzki, K., editor. 467–479.
- Wen, Jun and Pandey, A. K. 2006. "Intiating DNA molecular systematic studies in a developing country." In Plant Taxonomy: Advances and Relevance. Pandey, A. K., Wen, Jun, and Dogra, V. V., editors. 31–43.
- Wen, Jun, Foster, R., Qin, J., Meng, S., Deng, L., and Shi, X. 2003. "Vegetation and flora." In Rapid Biological Inventories 04: China: Yunnan, Southern Gaoligongshan. Stotz, D., editor. 32–34.
- Wen, Jun. 2001. "Species diversity, nomenclature, phylogeny, bigeography, and classification of the ginseng genus (Panax L., Araliaceae)." In Utilization of biotechnological, genetic and cultural approaches for North American and Asian ginseng improvement. Punja, Z. K., editor. 67–88.
- Breiteneder, H., Wen, Jun, and Scheiner, O. 2000. "The pollen allergens of the Betulaceae." In Dermatologic Botany. Avalos, J. and Maibach, H. I., editors. 169–185.
- Wen, Jun, Jansen, R. K., and Zimmer, Elizabeth Anne. 1996. "Phylogenetic relationships and DNA sequence divergence of eastern Asian and eastern North American disjunct plants." In Current Topics on Molecular Evolution. Nei, M. and Takahata, N., editors. 37–44.
Book
- Shui, Yu-Min, Sima, Yong-Kang, Wen, Jun, and Chen, Wen-Hong , editors. 2009. Vouchered Flora of Southeast Yunnan. Kunming: Yunnan Science & Technology Press.
- Pandey, A. K., Wen, Jun, and Dogra, V. V. 2006. Plant Taxonomy: Advances and Relevance. The CBS Publishers & Distributors.