Jonathan Coddington

Journal Article

• Blaxter, Mark, Archibald, John M., Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Di Palma, Federica, Durbin, Richard, Edwards, Scott V., Graves, Jennifer A. M., Hackett, Kevin J., Hall, Neil, Jarvis, Erich D., Johnson, Rebecca N., Karlsson, Elinor K., Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K. N., Lindblad-Toh, Kerstin, Lopez, Jose V., Moran, Nancy A., Robinson, Gene E., Ryder, Oliver A., Shapiro, Beth, Soltis, Pamela S., Warnow, Tandy et al. 2022. "Why sequence all eukaryotes?" Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115636118.
• Gostel, Morgan R., Carlsen, Mónica M., Devine, Amanda, Barker, Katharine B., Coddington, Jonathan A., and Steier, Julia. 2022. "Data Release: DNA Barcodes of Plant Species Collected for the Global Genome Initiative for Gardens (GGI-Gardens) II." Diversity, 14, (4). https://doi.org/10.3390/d14040234.
• Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J. et al. 2022. "Standards recommendations for the Earth BioGenome Project." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115639118.
• Lewin, Harris A., Richards, Stephen, Lieberman Aiden, Erez, Allende, Miguel L., Archibald, John M., Bálint, Miklós, Barker, Katharine B., Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L., Cai, Jing, Caperello, Nicolette D., Carlson, Keith, Castilla-Rubio, Juan, Chaw, Shu-Miaw, Chen, Lei, Childers, Anna K., Coddington, Jonathan A., Conde, Dalia A., Corominas, Montserrat, Crandall, Keith A., Crawford, Andrew J., DiPalma, Federica, Durbin, Richard et al. 2022. "The Earth BioGenome Project 2020: Starting the clock." Proceedings of the National Academy of Sciences of the United States of America, 119, (4). https://doi.org/10.1073/pnas.2115635118.
• Scholz, Amber Hartman, Freitag, Jens, Lyal, Christopher H. C., Sara, Rodrigo, Lucia Cepeda, Martha, Cancio, Ibon, Sett, Scarlett, Hufton, Andrew Lee, Abebaw, Yemisrach, Bansal, Kailash, Benbouza, Halima, Boga, Hamadi Iddi, Brisse, Sylvain, Bruford, Michael W., Clissold, Hayley, Cochrane, Guy, Coddington, Jonathan A., Deletoille, Anne-Caroline, Garcia-Cardona, Felipe, Hamer, Michelle, Hurtado-Ortiz, Raquel, Miano, Douglas W., Nicholson, David, Oliveira, Guilherme, Ospina Bravo, Carlos et al. 2022. "Multilateral benefit-sharing from digital sequence information will support both science and biodiversity conservation." Nature Communications, 13, (1). https://doi.org/10.1038/s41467-022-28594-0.
• Wolff, Jonas O., Wierucka, Kaja, Paterno, Gustavo B., Coddington, Jonathan A., Hormiga, Gustavo, Kelly, Michael B. J., Herberstein, Marie E., and Ramírez, Martín J. 2022. "Stabilized Morphological Evolution of Spiders Despite Mosaic Changes in Foraging Ecology." Systemic Biology, https://doi.org/10.1093/sysbio/syac023.
• Challita, Elio J., Alexander, Symone L. M., Han, Sarah I., Blackledge, Todd A., Coddington, Jonathan A., Jung, Sunghwan, and Bhamla, M. Saad. 2021. "Slingshot spiders build tensed, underdamped webs for ultrafast launches and speedy halts." Journal of Comparative Physiology A-Neuroethology Sensory Neural and Behavioral Physiology, https://doi.org/10.1007/s00359-021-01475-5.
• de Santana, C. David, Parenti, Lynne R., Dillman, Casey B., Coddington, Jonathan A., Bastos, Douglas A., Baldwin, Carole C., Zuanon, Jansen, Torrente-Vilara, Gislene, Covain, Raphaël, Menezes, Naércio A., Datovo, Aléssio, Sado, T., and Miya, M. 2021. "The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes." Scientific Reports, 11, (1). https://doi.org/10.1038/s41598-021-97128-3.
• Gainett, Guilherme, González, Vanessa L., Ballesteros, Jesus A., Setton, Emily V. W., Baker, Caitlin M., Barolo Gargiulo, Leonardo, Santibanez-Lopez, Carlos E., Coddington, Jonathan A., and Sharma, Prashant P. 2021. "The genome of a daddy-long-legs (Opiliones) illuminates the evolution of arachnid appendages." Proceedings of the Royal Society B: Biological Sciences, 288, (1956). https://doi.org/10.1098/rspb.2021.1168.
• Scharff, Nikolaj, Coddington, Jonathan A., Blackledge, Todd A., Agnarsson, Ingi, Framenau, Volker W., Szűts, Tamás, Hayashi, Cheryl Y., and Dimitrov, Dimitar. 2020. "Phylogeny of the orb-weaving spider family Araneidae (Araneae: Araneoidea)." Cladistics, 36, (1) 1–21. https://doi.org/10.1111/cla.12382.

• Coddington, Jonathan A., Agnarsson, Ingi, Hamilton, Chris A., and Bond, Jason E. 2019. "Spiders did not repeatedly gain, but repeatedly lost, foraging webs." Peerj, 7, (e6703). https://doi.org/10.7717/peerj.6703.
• Kuntner, Matjaž and Coddington, Jonathan A. 2019. "Sexual Size Dimorphism: Evolution and Perils of Extreme Phenotypes in Spiders." Annual Review of Entomology, 65, (1). https://doi.org/10.1146/annurev-ento-011019-025032.
• Kuntner, Matjaž, Hamilton, Chris A., Cheng, Ren-Chung, Gregoric, Matjaz, Lupse, Nik, Lokovsek, Tjasa, Lemmon, Emily Moriarty, Lemmon, Alan R., Agnarsson, Ingi, Coddington, Jonathan A., and Bond, Jason E. 2019. "Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism." Systematic Biology, 68, (4) 555–572. https://doi.org/10.1093/sysbio/syy082.
• Chamberland, Lisa, McHugh, Anne, Kechejian, Sarah, Binford, Greta J., Bond, Jason E., Coddington, Jonathan, Dolman, Gaynor, Hamilton, Chris A., Harvey, Mark S., Kuntner, Matjaž, and Agnarsson, Ingi. 2018. "From Gondwana to GAARlandia: Evolutionary history and biogeography of ogre-faced spiders (Deinopis)." Journal of Biogeography, 45, (11) 2442–2457. https://doi.org/10.1111/jbi.13431.
• González, Vanessa L., Devine, Amanda M., Trizna, Mike, Mulcahy, Daniel G., Barker, Katherine, and Coddington, Jonathan A. 2018. "Open access genomic resources for terrestrial arthropods." Current Opinion in Insect Science, 25 91–98. https://doi.org/10.1016/j.cois.2017.12.003.
• Lewin, Harris A., Robinson, Gene E., Kress, W. John, Baker, William J., Coddington, Jonathan, Crandall, Keith A., Durbin, Richard, Edwards, Scott V., Forest, Felix, Gilbert, M. Thomas P., Goldstein, Melissa M., Grigoriev, Igor V., Hackett, Kevin J., Haussler, David, Jarvis, Erich D., Johnson, Warren E., Patrinos, Aristides, Richards, Stephen, Castilla-Rubio, Juan Carlos, van Sluys, Marie-Anne, Soltis, Pamela S., Xu, Xun, Yang, Huanming, and Zhang, Guojie. 2018. "Earth BioGenome Project: Sequencing life for the future of life." Proceedings of the National Academy of Sciences of the United States of America, 115, (17) 4325–4333. https://doi.org/10.1073/pnas.1720115115.
• Wood, Hannah M., González, Vanessa L., Lloyd, Michael, Coddington, Jonathan, and Scharff, Nikolaj. 2018. "Next-Generation museum genomics: phylogenetic relationships among palpimanoid spiders using sequence capture techniques (Araneae: Palpimanoidea)." Molecular phylogenetics and evolution, 127 907–918. https://doi.org/10.1016/j.ympev.2018.06.038.
• Funk, Vicki A., Gostel, Morgan, Devine, Amanda, Kelloff, Carol L., Wurdack, Kenneth J., Tuccinardi, Chris, Radosavljevic, Aleks, Peters, Melinda, and Coddington, Jonathan. 2017. "Guidelines for collecting vouchers and tissues intended for genomic work (Smithsonian Institution): Botany Best Practices." Biodiversity Data Journal, (5) e11625. https://doi.org/10.3897/BDJ.5.e11625.
• Malumbres-Olarte, Jagoba, Scharff, Nikolaj, Pape, Thomas, Coddington, Jonathan A., and Cardoso, Pedro. 2017. "Gauging megadiversity with optimized and standardized sampling protocols: A case for tropical forest spiders." Ecology and Evolution, 7, (2) 494–506. https://doi.org/10.1002/ece3.2626.
• McCluskey, Kevin, Barker, Katharine B., Barton, Hazel A., Boundy-Mills, Kyria, Brown, Daniel R., Coddington, Jonathan A., Cook, Kevin, Desmeth, Philippe, Geiser, David, Glaeser, Jessie A., Greene, Stephanie, Kang, Seogchan, Lomas, Michael W., Melcher, Ulrich, Miller, Scott E., Nobles, David R., Owens, Kristina J., Reichman, Jerome H., da Silva, Manuela, Wertz, John, Whitworth, Cale, and Smith, David. 2017. "The U.S. Culture Collection Network Responding to the Requirements of the Nagoya Protocol on Access and Benefit Sharing." mBio, 8, (4). https://doi.org/10.1128/mBio.00982-17.
• Neumann, D., Borisenko, A. V., Coddington, Jonathan A., Häuser, C. L., Butler, Carol R., Casino, A., Vogel, J. C., Haszprunar, G., and Giere, P. 2017. "Global biodiversity research tied up by juridical interpretations of access and benefit sharing." Organisms Diversity & Evolution, 1–12. https://doi.org/10.1007/s13127-017-0347-1.
• Schwager, Evelyn E., Sharma, Prashant P., Clarke, Thomas, Leite, Daniel J., Wierschin, Torsten, Pechmann, Matthias, Akiyama-Oda, Yasuko, Esposito, Lauren, Bechsgaard, Jesper, Bilde, Trine, Buffry, Alexandra D., Chao, Hsu, Dinh, Huyen, Doddapaneni, HarshaVardhan, Dugan, Shannon, Eibner, Cornelius, Extavour, Cassandra G., Funch, Peter, Garb, Jessica, Gonzalez, Luis B., González, Vanessa L., Griffiths-Jones, Sam, Han, Yi, Hayashi, Cheryl, Hilbrant, Maarten et al. 2017. "The house spider genome reveals an ancient whole-genome duplication during arachnid evolution." BMC biology, 15, (1) 62. https://doi.org/10.1186/s12915-017-0399-x.
• Voolstra, Christian R., GIGA Community, of Scientists, Wörheide, Gert, Lopez, Jose V., and Coddington, Jonathan A. 2017. "Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA)." Invertebrate Systematics, 31, (1) 1–7. https://doi.org/10.1071/IS16059.
• Wheeler, Ward C., Coddington, Jonathan A., Crowley, Louise M., Dimitrov, Dimitar, Goloboff, Pablo A., Griswold, Charles E., Hormiga, Gustavo, Prendini, Lorenzo, Ramírez, Martín J., Sierwald, Petra, Almeida-Silva, Lina, Alvarez-Padilla, Fernando, Arnedo, Miquel A., Benavides Silva, Ligia R., Benjamin, Suresh P., Bond, Jason E., Grismado, Cristian J., Hasan, Emile, Hedin, Marshal, Izquierdo, Matías A., Labarque, Facundo M., Ledford, Joel, Lopardo, Lara, Maddison, Wayne P., Miller, Jeremy A. et al. 2017. "The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling." Cladistics, 33, (6) 574–616. https://doi.org/10.1111/cla.12182.
• Zúñiga, Jose D., Gostel, Morgan R., Mulcahy, Daniel G., Barker, Katharine, Hill, Asia, Sedaghatpour, Maryam, Vo, Samantha Q., Funk, Vicki Ann, and Coddington, Jonathan A. 2017. "Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution." PhytoKeys, 88 119–122. https://doi.org/10.3897/phytokeys.88.14607.
• Agnarsson, Ingi, LeQuier, Stephanie M., Kuntner, Matjaž, Cheng, Ren-Chung, Coddington, Jonathan A., and Binford, Greta. 2016. "Phylogeography of a good Caribbean disperser: Argiope argentata (Araneae, Araneidae) and a new 'cryptic' species from Cuba." ZooKeys, (625) 25–44. https://doi.org/10.3897/zookeys.625.8729.
• Coddington, Jonathan A., Agnarsson, Ingi, Cheng, Ren-Chung, Čandek, Klemen, Driskell, Amy, Frick, Holger, Gregorič, Matjaž, Kostanjšek, Rok, Kropf, Christian, Kweskin, Matthew, Lokovšek, Tjaša, Pipan, Miha, Vidergar, Nina, and Kuntner, Matjaž. 2016. "DNA barcode data accurately assign higher spider taxa." PeerJ, 4 e2201. https://doi.org/10.7717/peerj.2201.
• Droege, G., Barker, K., Seberg, O., Coddington, Jonathan A., Benson, E., Berendsohn, W. G., Bunk, B., Butler, C., Cawsey, E. M., Deck, J., Döring, M., Flemons, P., Gemeinholzer, B., Güntsch, A., Hollowell, Thomas H., Kelbert, P., Kostadinov, I., Kottmann, R., Lawlor, R. T., Lyal, Christopher H. C., Mackenzie-Dodds, J., Meyer, C., Mulcahy, D., Nussbeck, S. Y., O'Tuama, é. et al. 2016. "The Global Genome Biodiversity Network (GGBN) Data Standard specification." Database, 2016 1–11. https://doi.org/10.1093/database/baw125.
• Garrison, Nicole L., Rodriguez, Juanita, Agnarsson, Ingi, Coddington, Jonathan A., Griswold, Charles E., Hamilton, Christopher A., Hedin, Marshal, Kocot, Kevin M., Ledford, Joel M., and Bond, Jason E. 2016. "Spider phylogenomics: untangling the Spider Tree of Life." PeerJ, 4 e1719. https://doi.org/10.7717/peerj.1719.
• Mulcahy, Daniel G., Macdonald, Kenneth S., Brady, Seán G., Meyer, Christopher, Barker, Katharine B., and Coddington, Jonathan. 2016. "Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA." PeerJ, 4 e2528. https://doi.org/10.7717/peerj.2528.
• Seberg, O., Droege, G., Barker, K., Coddington, Jonathan A., Funk, Vicki Ann, Gostel, Morgan, Petersen, G., and Smith, P. P. 2016. "Global Genome Biodiversity Network: saving a blueprint of the Tree of Life - a botanical perspective." Annals of Botany, 118, (3) 393–399. https://doi.org/10.1093/aob/mcw121.
• Dziki, Austin, Binford, Greta J., Coddington, Jonathan A., and Agnarsson, Ingi. 2015. "Spintharus flavidus in the Caribbean-a 30 million year biogeographical history and radiation of a 'widespread species'." PeerJ, 3. https://doi.org/10.7717/peerj.1422.
• Davies, Neil, Field, Dawn, Amaral-Zettler, Linda, Bicak, Mesude, Bourlat, Sarah, Coddington, Jonathan A., Deck, John, Drummond, Alexei, Gilbert, Jack A., Glöckner, Frank Oliver, Kottmann, Renzo, Meyer, Christopher P., Morrison, Norman, Obst, Matthias, Robbins, Robert, Schriml, Lynn, Sterk, Peter, and Stones-Havas, Steven. 2014. "Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012." Standards in Genomic Sciences, 9, (3) 1236–1250. https://doi.org/10.4056/sigs.4319681.
• Davies, Neil, Field, Dawn, Amaral-Zettler, Linda, Clark, Melody S., Deck, John, Drummond, Alexei, Faith, Daniel P., Geller, Jonathan, Gilbert, Jack, Glöckner, Frank Oliver, Hirsch, Penny, Leong, Jo-Ann, Meyer, Christopher P., Obst, Matthias, Planes, Serge, Scholin, Chris, Vogler, Alfried P., Gates, Ruth D., Toonen, Robert J., Berteaux-Lecellier, V., Barbier, Michèle, Barker, Katherine, Bertilsson, Stefan, Bicak, Mesude, Bietz, Matthew J. et al. 2014. "The founding charter of the Genomic Observatories Network." GigaScience, 3, (1). https://doi.org/10.1186/2047-217X-3-2.
• Droege, Gabriele, Barker, Katharine, Astrin, Jonas J., Bartels, Paul, Butler, Carol R., Cantrill, David, Coddington, Jonathan A., Forest, Fé, Gemeinholzer, Birgit, Hobern, Donald, Mackenzie-Dodds, Jacqueline, Tuama, Éamonn Ó., Petersen, Gitte, Sanjur, Oris I., Schindel, David, and Seberg, Ole. 2014. "The Global Genome Biodiversity Network (GGBN) Data Portal." Nucleic acids research, 42, (D1) D607–D612. https://doi.org/10.1093/nar/gkt928.
• Kuntner, Matjaž, Năpăruş, Magdalena, Li, Daiqin, and Coddington, Jonathan A. 2014. "Phylogeny Predicts Future Habitat Shifts Due to Climate Change." PLoS ONE, 9, (6). https://doi.org/10.1371/journal.pone.0098907.
• Evans, Jay D., Brown, Susan, Hackett, Kevin J., Robinson, Gene, Richards, Stephen, Lawson, Daniel, Elsik, Christine, Coddington, Jonathan A., Edwards, Owain, Emrich, Scott, Gabaldon, Toni, Goldsmith, Marian, Hanes, Glenn, Misof, Bernard, Muñoz-Torres, Monica, Niehuis, Oliver, Papanicolaou, Alexie, Pfrender, Michael, Poelchau, Monica, Purcell-Miramontes, Mary, Robertson, Hugh M., Ryder, Oliver, Tagu, Denis, Torres, Tatiana, Zdobnov, Evgeny et al. 2013. "The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment." The Journal of heredity, 104, (5) 595–600. https://doi.org/10.1093/jhered/est050.
• Pekár, Stano, Coddington, Jonathan A., and Blackledge, Todd A. 2012. "Evolution of Stenophagy in Spiders (araneae): Evidence Based on the Comparative Analysis of Spider Diets." Evolution, 66, (3) 776–806. https://doi.org/10.1111/j.1558-5646.2011.01471.x.
• Wheeler, Quentin, Bourgoin, Thierry, Coddington, Jonathan A., Gostony, Timothy, Hamilton, Andrew, Larimer, Roy, Polaszek, Andrew, Schauff, Michael, and Solis, M. Alma. 2012. "Nomenclatural benchmarking: the roles of digital typification and telemicroscopy." Zookeys, (209) 193–202. https://doi.org/10.3897/zookeys.209.3486.
• Cardoso, Pedro, Pekár, Stano, Jocqué, Rudy, and Coddington, Jonathan A. 2011. "Global Patterns of Guild Composition and Functional Diversity of Spiders." PLoS ONE, 6, (6) 1–10. https://doi.org/10.1371/journal.pone.0021710.
• Higgins, Linden, Coddington, Jonathan A., Goodnight, Charles, and Kuntner, Matjaž. 2011. "Testing ecological and developmental hypotheses of mean and variation in adult size in nephilid orb-weaving spiders." Evolutionary Ecology, 25, (6) 1289–1306. https://doi.org/10.1007/s10682-011-9475-9.
• Agnarsson, Ingi, Kuntner, Matjaž, Coddington, Jonathan A., and Blackledge, Todd A. 2010. "Shifting continents, not behaviours: independent colonization of solitary and subsocial Anelosimus spider lineages on Madagascar (Araneae, Theridiidae)." Zoologica Scripta, 39, (1) 75–87. https://doi.org/10.1111/j.1463-6409.2009.00406.x.
• Ramirez, Martin J., Maddison, Wayne, and Coddington, Jonathan A. 2010. "Use of ontologies to document characters." Cladistics, 26, (2) 223–223.
• Blackledge, Todd A., Coddington, Jonathan A., and Agnarsson, Ingi. 2009. "Fecundity increase supports adaptive radiation hypothesis in spider web evolution." Communicative & Integrative Biology, 2, (6) 1–5. https://doi.org/10.4161/cib.2.6.8855.
• Blackledge, Todd A., Scharff, Nikolaj, Coddington, Jonathan A., Szüts, Tamas, Wenzel, John,W., Hayashi, Cheryl,Y., and Agnarsson, Ingi. 2009. "Reconstructing web evolution and spider diversification in the molecular era." Proceedings of the National Academy of Sciences of the United States of America, 106, (13) 5229–5234. https://doi.org/10.1073/pnas.0901377106.
• Coddington, Jonathan A., Agnarsson, Ingi, Miller, Jeremy A., Kuntner, Matjaž, and Hormiga, Gustavo. 2009. "Undersampling bias: the null hypothesis for singleton species in tropical arthropod surveys." Journal of Animal Ecology, 78, (3) 573–584. https://doi.org/10.1111/j.1365-2656.2009.01525.x.
• Coscaron, M. C., Melo, M. C., Coddington, Jonathan A., and Corronca, J. 2009. "Estimating biodiversity: a case study on true bugs in argentinian wetlands." Biodiversity and Conservation, 18, (6) 1491–1507. https://doi.org/10.1007/s10531-008-9515-0.
• Kuntner, Matjaž and Coddington, Jonathan A. 2009. "Discovery of the Largest Orbweaving Spider Species: The Evolution of Gigantism in Nephila." PLoS ONE, 4, (10) e7516.
• Kuntner, Matjaž, Coddington, Jonathan A., and Schneider, Jutta M. 2009. "Intersexual Arms Race? Genital Coevolution in Nephilid Spiders (Araneae, Nephilidae)." Evolution, 63, (6) 1451–1463. https://doi.org/10.1111/j.1558-5646.2009.00634.x.
• Stork, Nigel E., Coddington, Jonathan A., Colwell, Robert K., Chazdon, Robin L., Dick, Christopher W., Peres, Carlos A., Sloan, Sean, and Willis, Kathy. 2009. "Vulnerability and Resilience of Tropical Forest Species to Land-Use Change." Conservation Biology, 23, (6) 1438–1447. https://doi.org/10.1111/j.1523-1739.2009.01335.x.
• Agnarsson, Ingi and Coddington, Jonathan A. 2008. "Quantitative tests of primary homology." Cladistics, 24, (1) 51–61. https://doi.org/10.1111/j.1096-0031.2007.00168.x.
• Kuntner, Matjaž, Coddington, Jonathan A., and Hormiga, G. 2008. "Phylogeny of extant nephilid orb-weaving spiders (Araneae, Nephilidae): testing morphological and ethological homologies." Cladistics, 24, (2) 147–217. https://doi.org/10.1111/j.1096-0031.2007.00176.x.
• Agnarsson, Ingi, Coddington, Jonathan A., and Knoflach, Barbara. 2007. "Morphology and evolution of cobweb spider male genitalia (Araneae: Theridiidae)." Journal of Arachnology, 35 334–395.
• Agnarsson, Ingi, Coddington, Jonathan A., and May-Collado, L. J. 2007. "Elongated pedicillate setae: A putative sensory system and synapomorphy of spiders." Journal of Arachnology, 35, (3) 411–426. https://doi.org/10.1636/SH07-01.1.
• Coddington, Jonathan A. 2007. "Subsociality in Helvibis thorelli Keyserling, 1884 (Theridiinae, Theridiidae, Araneae) from French Guiana." Journal of Arachnology, 34, (3) 642–645. https://doi.org/10.1636/05-84.1.
• Ramirez, Martin J., Coddington, Jonathan A., Maddison, Wayne P., Midford, Peter E., Prendini, Lorenzo, Miller, Jeremy, Griswold, Charles E., Hormiga, Gustavo, Sierwald, Petra, and Scharff, Nikolaj. 2007. "Linking of Digital Images to Phylogenetic Data Matrices Using a Morphological Ontology." Systematic Biology, 56, (2) 283–294. https://doi.org/10.1080/10635150701313848.
• Rowley, D. L., Coddington, Jonathan A., Gates, Michael W., Norrbom, Allen L., Ochoa, Ronald, Vandenberg, Natalia J., and Greenstone, M. H. 2007. "Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods." Molecular Ecology Notes, 7 915–924.
• Agnarsson, Ingi, Avil‚Leticia S., Coddington, Jonathan A., and Maddison, Wayne P. 2006. "Sociality in theridiid spiders: repeated origins of an evolutionary dead end." Evolution, 60, (11) 2342–51.
• Agnarsson, Ingi and Coddington, Jonathan A. 2006. "Notes on web and web plasticity and description of the male of Achaearanea heiroglyphica (Mello-LeitÆo)(Theridiidae, Araneae)." Journal of Arachnology, 34 638–641.
• Ramos, Margarita, Coddington, Jonathan A., Christenson, Terry E., and Irschick, Duncan J. 2005. "Have Male and Female Genitalia Coevolved? a Phylogenetic Analysis of Genitalic Morphology and Sexual Size Dimorphism in Web-Building Spiders (araneae: Araneoidea)." Evolution, 59, (9) 1989–1999.
• Arnedo, M. A., Coddington, Jonathan A., Agnarsson, Ingi, and Gillespie, R. G. 2004. "From a Comb to a Tree: Phylogenetic Relationships of the Comb-footed Spiders (Araneae, Theridiidae) Inferred from Nuclear and Mitochondrial Genes." Molecular Phylogenetics and Evolution, 31 225–245.
• Blackledge, Todd A., Coddington, Jonathan A., and Gillespie, Rosemary G. 2003. "Are Three-Dimensional Spider Webs Defensive Adaptations?" Ecology Letters, 6, (1) 13–18.
• Scharff, Nikolaj, Coddington, Jonathan A., Griswold, C. E., Hormiga, G., and Place Bjorn, P. de. 2003. "When to Quit? Esitmating Spider Species Richness in a Northern European Deciduous Forest." Journal of Arachnology, 31 210–246.
• Coddington, Jonathan A., Chanzy, H. D., Jackson, C. L., Ray, G., and Gardner, K. H. 2002. "The Unique Ribbon Morphology of the Major Ampullate Silk of Spiders from the Genus Loxosceles (recluse spiders)." Biomacromolecules, 3, (1-2) 5–8.
• Longino, J. I., Coddington, Jonathan A., and Colwell, Robert K. 2002. "The Ant Fauna of a Tropical Rainforest: Estimating Species Richness Three Different Ways." Ecology, 83, (3) 689–702.
• Sorensen, L. L., Coddington, Jonathan A., Griswold, C. E., Hormiga, G., and Place Bjorn, P. de. 2002. "Inventorying and Estimating Sub-Canopy Spider Diversity using Semi-Quantitative Sampling Methods in an Afromontane Forest." Environmental Entomology, 31, (2) 319–330.
• Herberstein, M. E., Craig, Catherine L., Coddington, Jonathan A., and Elgar, M. A. 2000. "The Functional Significance of Silk Decorations of Orb-Web Spiders: A Critical Review of the Empirical Evidence." Biological Reviews, 75 649–669.
• Hormiga, G., Scharff, Nikolaj, and Coddington, Jonathan A. 2000. "The Phylogenic Basis of Sexual Size Dimporphism in Orb Weaving Spiders (Araneae, Orbiculariae)." Systematic Biology, 49 435–462.
• Griswold, C. E., Coddington, Jonathan A., Platnick, N. I., and Forster, R. R. 1999. "Towards a Phylogeny of Entelegyne Spiders (Araneae, Araneomorphae, Entelegynae)." The Journal of Arachnology, 27 53–63.
• Heyer, W. Ronald, Coddington, Jonathan A., Kress, W. John, Acevedo-Rodríguez, Pedro, Cole, Daniel G., Erwin, Terry L., Meggers, Betty J., Pogue, Michael G., Thorington, Richard W., Jr., Vari, Richard P., Weitzman, Marilyn J., and Weitzman, Stanley H. 1999. "Amazonian biotic data and conservation decisions." Ciência e Cultura Sao Paulo, 51, (5-6) 372–385.
• Griswold, C. E., Coddington, Jonathan A., Hormiga, G., and Scharff, Nikolaj. 1998. "Phylogeny of the orb-web building spiders (Araneae, Orbiculariae: Deinopoidea, Araneoidea)." Zoological Journal of the Linnean Society, 123 1–99.
• Kress, W. John, Heyer, W. Ronald, Acevedo-Rodríguez, Pedro, Coddington, Jonathan A., Cole, Daniel G., Erwin, Terry L., Meggers, Betty J., Pogue, Michael G., Thorington, Richard W., Jr., Vari, Richard P., Weitzman, Marilyn J., and Weitzman, Stanley H. 1998. "Amazonian biodiversity: Assessing conservation priorities with taxonomic data." Biodiversity and Conservation, 7, (12) 1577–1587. https://doi.org/10.1023/A:1008889803319.
• Coddington, Jonathan A., Hormiga, Gustavo, and Scharff, Nikolaj. 1997. "Giant female or dwarf male spiders?" Nature, 385, (6618) 687–688.
• Scharff, Nikolaj and Coddington, Jonathan A. 1997. "A phylogenetic analysis of the orb-weaving spider family Araneidae (Arachnida, Araneae)." Zoological Journal of the Linnean Society, 120 355–434.
• Coddington, Jonathan A. and Scharff, Nikolaj. 1996. "Problems with "Soft" Polytomies." Cladistics, 12, (2) 139–145. https://doi.org/10.1111/j.1096-0031.1996.tb00198.x.
• Coddington, Jonathan A., Young, Laurel H., and Coyle, Frederick A. 1996. "Estimating Spider Species Richness in a Southern Appalachian Cove Hardwood Forest." Journal of Arachnology, 24, (2) 111–128.
• Brooks, Daniel R., McLennan, Deobrah A., Carpenter, James M., Weller, Stephen G., and Coddington, Jonathan A. 1995. "Systematics, ecology and behavior: integrating phylogenetic patterns and evolutionary mechanisms." Bioscience, 45, (10) 687–695.
• Hormiga, G., Eberhard, William G., and Coddington, Jonathan A. 1995. "Web-construction Behaviour in Australian Phonognatha and Phylogeny of Nephiline and Tetragnathid Spiders (Araneae: Tetragnathidae)." Australian Journal of Zoology, 43 313–364.
• Coddington, Jonathan A. and Scharff, Nikolaj. 1994. "Problems with Zero-Length Branches." Cladistics, 10 415–423.
• Colwell, Robert K. and Coddington, Jonathan A. 1994. "Estimating Terrestrial Biodiversity Through Extrapolation." Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 345 101–118.
• Craig, Catherine L., Bernard, G. D., and Coddington, Jonathan A. 1994. "Evolutionary Shifts in the Spectral Properties of Spider Silks." Evolution, 48, (2) 287–296.
• Coddington, Jonathan A. 1991. "Cladistics and Spider Classification: Araneomorph Phylogeny and the Monophyly of Orbweavers (Araneae: Araneomorphae, Orbiculariae)." Acta Zoologica Fennica, 190 75–87.
• Coddington, Jonathan A. 1991. "Spider Literature: A Computer Bibliography, ver. 3. [About 24,000 keyworded bibliographic citations (3.8 megabytes), available on diskette]." Smithsonian Institution, Washington, 1–1307.
• Coddington, Jonathan A. and Levi, H. W. 1991. "Systematics and Evolution of Spiders (Araneae)." Annual Review of Ecology and Systematics, 22 565–592.
• Platnick, N. I., Coddington, Jonathan A., Forster, R. R., and Griswold, C. E. 1991. "Spinneret Morphology and the Phylogeny of Haplogyne Spiders (Araneae, Araneomorphae)." American Museum Novitates, 3016 1–73.
• Platnick, N. I., Griswold, C. E., and Coddington, Jonathan A. 1991. "On Missing Entries in Cladistic Analysis." Cladistics, 7, (4) 337–343.
• Coddington, Jonathan A. 1990. "Bridges Between Evolutionary Pattern and Process." Cladistics, 6, (4) 379–386. https://doi.org/10.1111/j.1096-0031.1990.tb00553.x.
• Coddington, Jonathan A., Horner, M., and Soderstrom, E. A. 1990. "Mass Aggregations in Tropical Harvestment (Opiliones, Gragrellidae: Prionostemma sp.)." Revue Arachnologique, 8, (13) 213–219.
• Döbel, H. G., Denno, R. F., and Coddington, Jonathan A. 1990. "Spider (Araneae) Community Structure in an Intertidal Salt Marsh: Effects of Vegetation Structure and Tidal Flooding." Environmental Entomology, 19, (5) 1356–1370.
• Forster, R. R., Platnick, N. I., and Coddington, Jonathan A. 1990. "A Proposal and Review of the Spider Family Synotaxidae (Araneae, Araneoidea), with notes on Theridiid Interrelationships." Bulletin of the American Museum of Natural History, 193 1–116.
• Yu, L. M. and Coddington, Jonathan A. 1990. "Ontogenetic Changes in the Spinning Fields of Nuctenea cornuta and Neoscona theisi (Araneae, Araneidae)." Journal of Arachnology, 18 331–345.
• Coddington, Jonathan A. 1989. "Spinneret Silk Spigot Morphology: Evidence for the Monophyly of Orbweaving Spiders, Cyrtophorinae (Araneidae), and the Group Theridiidae plus Nesticidae." Journal of Arachnology, 17 71–95.
• Shear, W. A., Palmer, J. M., Coddington, Jonathan A., and Bonamo, P. M. 1989. "A Devonian Spinneret: Early Evidence of Spiders and Silk Use." Science, 246 479–481.
• Coddington, Jonathan A. 1988. "Cladistic Tests of Adaptational Hypotheses." Cladistics, 4, (1) 3–22. https://doi.org/10.1111/j.1096-0031.1988.tb00465.x.
• Coddington, Jonathan A. 1988. "Graduate Training in Systematics at the Maryland Center for Systematic Entomology." American Arachnology, 37 5.
• Coddington, Jonathan A. 1988. "A Computerized Bibliography of Spider Literature Since 1940." American Arachnology, 37 4.
• Sierwald, P. and Coddington, Jonathan A. 1988. "Functional Aspects of the Male Palpal Organs in Dolomedes tenebrosus, with notes on the Mating Behavior (Araneae, Pisauridae)." Journal of Arachnology, 16, (2) 262–265.
• Coddington, Jonathan A. 1987. "The Shape of Things that Come: Review of Sexual Selection and Animal Genitalia." Cladistics, 3, (2) 196–198.
• Coddington, Jonathan A. 1987. "Notes on Spider Natural History: the Webs and Habits of Araneus niveus and A. cingulatus (Araneae, Araneidae)." Journal of Arachnology, 15, (2) 268–270.
• Coddington, Jonathan A. 1987. "The Sixth Annual Meeting of the Willi Hennig Society." Cladistics, 3, (2) 178–185.
• Coddington, Jonathan A. and Sobrevila, C. 1987. "Web Manipulation and Two Stereotyped Attack Behaviors in the Ogre-faced Spider Deinopis spinosus Marx (Araneae, Deinopidae)." Journal of Arachnology, 15, (2) 213–225.
• Coddington, Jonathan A. 1986. "Orb Webs in "Non-orb Weaving" Ogre-faced Spiders (Araneae: Dinopidae): a Question of Genealogy." Cladistics, 2, (1) 53–67. https://doi.org/10.1111/j.1096-0031.1986.tb00442.x.
• Coddington, Jonathan A. 1985. "Field Trip Report." American Arachnology, 32 8.
• Coddington, Jonathan A. 1984. "Current Research." American Arachnology, 29 9–10.
• Coddington, Jonathan A. 1984. "Systematics and Behavior of Orb Weaving Spiders." Dissertation Abstracts International B Sciences and Engineering, 45, (2) 429.
• Coddington, Jonathan A. 1983. "Biology of Spiders by R. F. Foelix, and Spider Communication: Mechanisms and Ecological Significance, P. N. Witt & J. S. Rovner, (Eds.)." Bioscience, 208.
• Coddington, Jonathan A. 1983. "The Weavers." Discover, 4 48–53.
• Levi, H. W. and Coddington, Jonathan A. 1983. "Progress Report on the Phylogeny of the Orb-weaving Family Araneidae and the Superfamily Araneoidea (Arachnida: Araneae)." Abhandlungen und Verhandlungen der naturwissen-schaftlichen Vereins in Hamburg, 26 151–154.
• Coddington, Jonathan A. and Valerio, C. E. 1980. "Observations on the Web and Behavior of Wendilgarda Spiders (Araneae: Theridiosomatidae)." Psyche, 87, (1-2) 93–105.
• Field, K. G. and Coddington, Jonathan A. 1980. "Rare Plant Species in Massachusetts." Rhodora, 82 151–162.
• Coddington, Jonathan A. and Field, K. G. 1978. "Rare and Endangered Vascular Plant Species in Massachusetts." Office of Endangered Species: U.S.Fish and Wildlife Service Newton Center, MA, MA 1–52.

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Dataset

• Wolff, Jonas O., Wierucka, Kaja, Coddington, Jonathan A., Hormiga, Gustavo, Kelly, Michael B. J., Herberstein, Marie E., Ramírez, Martín J., and Paterno, Gustavo B. 2021. [Dataset] Stabilized morphological evolution of spiders despite mosaic changes in foraging ecology. Distributed by Dryad. https://doi.org/10.5061/DRYAD.2280GB5RZ.

Book Chapter

• Coddington, Jonathan A. 2017. "Theridiosomatidae." In Spiders of North America: an identification manual. D. Ubick, P. Paquin, P. E. Cushing,and V.Roth, editor. 270–271. Denver: American Arachnological Society.
• Coddington, Jonathan A. 2017. "Deinopidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 102–103. Denver: American Arachnological Society.
• Lopardo, Lara and Coddington, Jonathan A. 2017. "Anapidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 73–74. Denver: American Arachnological Society.
• Lopardo, Lara and Coddington, Jonathan A. 2017. "Mysmenidae." In Spiders of North America: an identification manual. Ubick, D., Paquin, P., Cushing, P. E., and Roth, V., editors. 187–188. Denver: American Arachnological Society.
• Lopardo, Lara, Coddington, Jonathan A., and Paquin, P. 2017. "Symphytognathidae." In Spiders of North America: an identification manual. D. Ubick, P. Paquin, P. E. Cushing,and V.Roth, editor. 248–249. Denver: American Arachnological Society.
• Coddington, Jonathan A., Barker, Katharine, Droege, Gabriele, Astrin, Jonas J., Bartels, Paul, Butler, Carol R., Cantrill, David, Forest, Felix, Gemeinholzer, Birgit, Hobern, Donald, Mackenzie-Dodds, Jackie, Tuama, Éamonn Ó., Petersen, Gitte, Sanjur, Oris I., Schindel, David E., and Seberg, Ole. 2014. "GGBN: Making Genomic Collections Discoverable for Research through a Networked Community of Biodiversity Repositories." In DNA Banking for the 21st Century. Applequist, W. A. and Campbell, L. M., editors. 165–168.
• Agnarsson, Ingi, Coddington, Jonathan A., and Kuntner, Matjaž. 2013. "Systematics: progress in the study of spider diversity and evolution." In Spider Research in the 21st Century: Trends and Perspectives. Penney, David, editor. 58–111. Siri Scientific Press.
• Coddington, Jonathan A. 2006. "Black Widow." In World Book Encyclopedia. World Book.
• Coddington, Jonathan A. 2006. "Centipede." In World Book Encyclopedia. World Book.
• Coddington, Jonathan A. 2006. "Spider." In World Book Encyclopedia. World Book.

• Coddington, Jonathan A. 2006. "Tick." In World Book Encyclopedia. World Book.
• Coddington, Jonathan A. 2005. "Deinopidae." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 64–65. American Arachnology Society.
• Coddington, Jonathan A. 2005. "Anapidae." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 64–65. American Arachnology Society.
• Coddington, Jonathan A. 2005. "Phylogeny and Classification of Spiders." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 18–24. American Arachnology Society.
• Coddington, Jonathan A. 2005. "Theridiosomatidae." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 244–245. American Arachnology Society.
• Coddington, Jonathan A. 2005. "Symphytognathidae." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 226–227. American Arachnology Society.
• Lopardo, L. and Coddington, Jonathan A. 2005. "Mysmenidae." In Spiders of North America: an Identification Manual. Ubick, D., Cushing, P. E., and Paquin, P., editors. 175–177. American Arachnology Society.
• Coddington, Jonathan A., Giribet, G., Harvey, M. S., Prendini, L., and Walter, D. E. 2004. "Arachnida." In Assembling the Tree of Life. Cracraft, J. and Donoghue, M. J., editors. 296–318. Oxford University Press.
• Hormiga, G. and Coddington, Jonathan A. 2001. "Patrones Filogeneticos de Dimorfismo Sexual de Tamano en Las Aranas Tejedoras de Telas Orbiculares (Araneae, Orbiculariae)." In Enfoques Contimporaneos para el Studio de la Biodiversidad. 149–168.
• Coddington, Jonathan A. and Colwell, Robert K. 2000. "Arachnids." In Encyclopedia of Biodiversity, 1. 199–218.
• Silva, Diana and Coddington, Jonathan A. 1996. "Spiders of Pakitza (Madre de Dios, Perú): species richness and notes on community structure." In Manu: The Biodiversity of Southeastern Peru. 253–311.
• Bisby, F. A. and Coddington, Jonathan A. 1995. "Biodiversity from a taxonomic and evolutionary perspective." In Global Biodiversity Assessment. 27–57.
• Coddington, Jonathan A. 1994. "The Roles of Homology and Convergence in Studies of Adaptation." In Phylogenetics and Ecology. 53–78.
• Coddington, Jonathan A., Griswold, C. E., Silva, D., Peñaranda, E., and Larcher, S. F. 1991. "Designing and Testing Sampling Protocols to Estimate Biodiversity in Tropical Ecosystems." In The Unity of Evolutionary Biology: Proceedings of the Fourth International Congress of Systematic and Evolutionary Biology, 2 vols. 44–60.
• Coddington, Jonathan A., Hammond, P., Olivieri, S., Robertson, J., Sokolov, V., Stork, N., and Taylor, E. 1991. "Monitoring and Inventorying Biodiversity from Genes to Ecosystems." In From Genes to Ecosystems: a Research Agenda for Biodiversity. 83–109.
• Coddington, Jonathan A., Larcher, S. F., and Cokendolpher, J. C. 1990. "The Systematic Status of Arachnida, Exclusive of Acari, in North America North of Mexico." In Systematics of the North American insects and arachnids: Status and needs. Kosztarab, M. and Schaefer, C. W., editors. 5–20. Blacksburg, VA: Virginia Polytechnic Institute and State University. 90 in Virginia Agricultural Experiment Station Information Series.
• Coddington, Jonathan A. 1986. "The Monophyletic Origin of the Orb Web." In Spiders: Webs, Behavior, and Evolution. 319–363.
• Coddington, Jonathan A. 1983. "A Temporary Slide-mount Allowing Precise Manipulation of Small Structures." In Taxonomy, Biology and Ecology of the Araneae. 26.

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Book

• Coddington, Jonathan A., Kuntner, Matjaž, and Opell, Brent D. 2012. Systematics of the Spider Family Deinopidae with a Revision of the Genus Menneus. Smithsonian Institution Scholarly Press. In Smithsonian Contributions to Zoology, 636. https://doi.org/10.5479/si.00810282.636.1.
• Griswold, Charles E., Ramirez, Martin J., Coddington, Jonathan A., and Platnick, Norman I. 2005. Atlas of phylogenetic data for entelegyne spiders (Araneae: Araneomorphae: Entelegynae) with comments on their phylogeny. California Academy of Sciences. In Proceedings of the California Academy of Sciences, v.56, Suppl. 2.
• Coddington, Jonathan A. 1990. Ontogeny and Homology in the Male Palpus of Orb Weaving Spiders and their Relatives, with Comments on Phylogeny (Araneoclada: Araneoidea, Deinopoidea). In Smithsonian Contributions to Zoology, 496. https://doi.org/10.5479/si.00810282.496.
• Coddington, Jonathan A. 1986. The Genera of the Spider Family Theridiosomatidae. In Smithsonian Contributions to Zoology, 422. https://doi.org/10.5479/si.00810282.422.

Book Review

• Coddington, Jonathan A. 2003. [Book review] "Joachim Adis, ed., Amazonian Arachnida and Myriapoda." Studies on Neotropical Fauna and Environment, 38, (3), 251–252.
• Coddington, Jonathan A. 1992. [Book review] "The Comparative Method in Evolutionary Biology, by P. H. Harvey and M. D. Pagel." Trends in Ecology and Evolution, 7, (2), 68–69.
• Coddington, Jonathan A. 1990. [Book review] "Advances in Spider Taxonomy 1981-1987: a Supplement to Brignoli&#39s A Catalog of the Araneae Described Between 1940 and 1981, by Norman I. Platnick, 1989. (Edited by P. Merrett). Manchester University Press." Journal of Arachnology, 18, 245–248.
• Coddington, Jonathan A. 1985. [Book review] "The Explanation of Organic Diversity: The Comparative Method and Adaptations for Mating." Cladistics, 1, (1), 102–107.